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The map label for this gene is ytrP [H]

Identifier: 59711807

GI number: 59711807

Start: 1332611

End: 1334686

Strand: Reverse

Name: ytrP [H]

Synonym: VF_1200

Alternate gene names: 59711807

Gene position: 1334686-1332611 (Counterclockwise)

Preceding gene: 59711808

Following gene: 59711806

Centisome position: 46.06

GC content: 34.54

Gene sequence:

>2076_bases
ATGGCTAAGAATCAATGGAATGAGTTACTGCTCGAACAAGTACGACAATTACCTATGGCTTCTTCAAAAGAGCACGTACA
GTTACGTCTTAATCTTTTAATAGTCGAAGCATCAAAGCAAAAAAAAACTATCCCAACTGAATTTGAGCTCATTTTTCAAG
CCTATCAACTTTCTCGCTCAGGAAAGCTCATTGACTCTATTAGTGTCTTTTTTGATGCCATTAATTTTAGTCAACAAAAC
CAACAAGAATTTTTAATCTGCTTCTGTCATTACAATATCGGCACGCTTTATGGCATGCTCGGAAATTACTTTTATGCTCA
AAAATTTCTGGCAAAAGCCGAAAAAATGCAGCAGTTCTGCGATGGCTATATTACGGGGATAATAAAAAACAATATTGGTG
ATATTTTTCGCCAAATTGGTAATTTTAATGAAGCCTTAATCTACCTAACACAAGCTGCTGAACTACTCTCTCAACATGGC
CCTAAGACCGCAGCAGCCCTGTCATATTTTAATATTGCAGAAATAAAAGCTAAGCAATTCCTTTTTACCGAAGCAAATGA
ATTACTTGAAAACCTATATCAAGATATTAAAAATGAACCAAGATATTTAGGGTTTTACTACAAAATTAAAGCAGAGATAG
CAAGCCATTCAGGTGAATTCGAACAAGCTGATAAACTCCATCTCTTATCTATTGAGAATATGCAAATATCCGAGCATGAT
TATTATTATGCTGAAATGATCTTAGAGTACTGCCACTTTTTAACTAGTTGCTTGCAATATAAAAAACTAGATCAATTTAT
TGCTCTTGGTTTAGCTGTGGCAAAAAAAATAGAAAGTGACAAGCTTATCGATGGTTTCAACGATATCATTCTATTAAGAA
TAAAAGACATCGATGATATCAATATTCGTGAGAAACATTATCAGACCCTTACCTCTTCATTACTTAATTCAAGAAGAGAG
TTGCTTAAGCGTGAAGGTGATTATTTACAACAGCTGTATCGCTTAAACGTTGCTAAATTAAACCTAAGTACCATGAAATC
ACTATCGGATAATTTAGCCGTTATAAATAAAGTTGGGCATTACATTAATACCAGTAGTGATATTAAAAATGCATTGCCAC
AAATACAGCAAGACCTCGCCTCTCTGTTTCAAACAGATACGCTCGCTCTGGGATTTTATAACTCTGAACAAGATCAAATT
ACGATTCATTACTTGGATAATAATTTACCAGCGCAAACGCCATACATCACCGATTGTAAAAGTGAAGCCACTTATATGAG
TTACTGCATAAAAAGTAATTCTGCTTTTTATTTTAATCATATGAACAGCGAACAAAAAGTAGCAATGCTAGGTGATCGTT
GTGATAGCAAAGTGCAATTTAAATCGGCTATGTTCTCTCCTATTACTATCAATGGTGAAGTAAAAGGGGTATTCACCATA
CAAGCAAGAGAAAGCTACCAGTATCAAACTTTTCATTTTGAGCTGTTTTCGCAACTCATAAGCTACATATCCATCGCCCT
TGAAAATCAGTACAATCGCCAACAACTTTTGCATTTATCCCAAACAGATCATCTTACACAGATATGGAATAGAAAATCTC
TTGAAGCTCATTTCAATCAATTAAAACAACAACAGAATCAAGAGTACACTGGGATAATGATCGACATCGACCACTATAAA
GAATACAACGATACGTATGGTCATATTGCTGGTGATGAAGTTCTTATTCAAGTTAGTCGTTTAATCAAGCAAGGTTTTCA
TAGTTTAGAAACCCAAGTATATCGCTATGGTGGCGACGAATTTTTCGTTCTAATACCGAGCATAAAGCCAGAAAAGATCC
GTCAAAAATTAGATAAGTTATTAATAGAAGTGAAAAAGCTATTGATACCACATAAGGCATCAACTTGTTCATGCTATTTA
TCAATCTCTGTCGGTATTGGTTATAACAAAGATCCTGAAAACCAACTCAGCCTGAATTCTCTGGTTAATACTGCTGATAG
AGCACTATATCAAGCAAAAGAAAATGGCCGAAATTGCTATTTTGAATTAGCGCATATCAAAGAAACCATGTATTAA

Upstream 100 bases:

>100_bases
TTTTCATTTTTAACAACTCAGAAATGAGACTTCGCTTCATATAAAAGAACATCCATGCGATAATCTCTTGTAATTAGACT
AAAAATTATAAAAAAGAATT

Downstream 100 bases:

>100_bases
TTTCTCATTTATCACCTTCAATATTTCATGGCTTGTGTTACTCTTTCTTAAGGGAAATAAACTGAAAGCTCTTTAAGCAT
GACTAAAATACACATCAACA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 691; Mature: 690

Protein sequence:

>691_residues
MAKNQWNELLLEQVRQLPMASSKEHVQLRLNLLIVEASKQKKTIPTEFELIFQAYQLSRSGKLIDSISVFFDAINFSQQN
QQEFLICFCHYNIGTLYGMLGNYFYAQKFLAKAEKMQQFCDGYITGIIKNNIGDIFRQIGNFNEALIYLTQAAELLSQHG
PKTAAALSYFNIAEIKAKQFLFTEANELLENLYQDIKNEPRYLGFYYKIKAEIASHSGEFEQADKLHLLSIENMQISEHD
YYYAEMILEYCHFLTSCLQYKKLDQFIALGLAVAKKIESDKLIDGFNDIILLRIKDIDDINIREKHYQTLTSSLLNSRRE
LLKREGDYLQQLYRLNVAKLNLSTMKSLSDNLAVINKVGHYINTSSDIKNALPQIQQDLASLFQTDTLALGFYNSEQDQI
TIHYLDNNLPAQTPYITDCKSEATYMSYCIKSNSAFYFNHMNSEQKVAMLGDRCDSKVQFKSAMFSPITINGEVKGVFTI
QARESYQYQTFHFELFSQLISYISIALENQYNRQQLLHLSQTDHLTQIWNRKSLEAHFNQLKQQQNQEYTGIMIDIDHYK
EYNDTYGHIAGDEVLIQVSRLIKQGFHSLETQVYRYGGDEFFVLIPSIKPEKIRQKLDKLLIEVKKLLIPHKASTCSCYL
SISVGIGYNKDPENQLSLNSLVNTADRALYQAKENGRNCYFELAHIKETMY

Sequences:

>Translated_691_residues
MAKNQWNELLLEQVRQLPMASSKEHVQLRLNLLIVEASKQKKTIPTEFELIFQAYQLSRSGKLIDSISVFFDAINFSQQN
QQEFLICFCHYNIGTLYGMLGNYFYAQKFLAKAEKMQQFCDGYITGIIKNNIGDIFRQIGNFNEALIYLTQAAELLSQHG
PKTAAALSYFNIAEIKAKQFLFTEANELLENLYQDIKNEPRYLGFYYKIKAEIASHSGEFEQADKLHLLSIENMQISEHD
YYYAEMILEYCHFLTSCLQYKKLDQFIALGLAVAKKIESDKLIDGFNDIILLRIKDIDDINIREKHYQTLTSSLLNSRRE
LLKREGDYLQQLYRLNVAKLNLSTMKSLSDNLAVINKVGHYINTSSDIKNALPQIQQDLASLFQTDTLALGFYNSEQDQI
TIHYLDNNLPAQTPYITDCKSEATYMSYCIKSNSAFYFNHMNSEQKVAMLGDRCDSKVQFKSAMFSPITINGEVKGVFTI
QARESYQYQTFHFELFSQLISYISIALENQYNRQQLLHLSQTDHLTQIWNRKSLEAHFNQLKQQQNQEYTGIMIDIDHYK
EYNDTYGHIAGDEVLIQVSRLIKQGFHSLETQVYRYGGDEFFVLIPSIKPEKIRQKLDKLLIEVKKLLIPHKASTCSCYL
SISVGIGYNKDPENQLSLNSLVNTADRALYQAKENGRNCYFELAHIKETMY
>Mature_690_residues
AKNQWNELLLEQVRQLPMASSKEHVQLRLNLLIVEASKQKKTIPTEFELIFQAYQLSRSGKLIDSISVFFDAINFSQQNQ
QEFLICFCHYNIGTLYGMLGNYFYAQKFLAKAEKMQQFCDGYITGIIKNNIGDIFRQIGNFNEALIYLTQAAELLSQHGP
KTAAALSYFNIAEIKAKQFLFTEANELLENLYQDIKNEPRYLGFYYKIKAEIASHSGEFEQADKLHLLSIENMQISEHDY
YYAEMILEYCHFLTSCLQYKKLDQFIALGLAVAKKIESDKLIDGFNDIILLRIKDIDDINIREKHYQTLTSSLLNSRREL
LKREGDYLQQLYRLNVAKLNLSTMKSLSDNLAVINKVGHYINTSSDIKNALPQIQQDLASLFQTDTLALGFYNSEQDQIT
IHYLDNNLPAQTPYITDCKSEATYMSYCIKSNSAFYFNHMNSEQKVAMLGDRCDSKVQFKSAMFSPITINGEVKGVFTIQ
ARESYQYQTFHFELFSQLISYISIALENQYNRQQLLHLSQTDHLTQIWNRKSLEAHFNQLKQQQNQEYTGIMIDIDHYKE
YNDTYGHIAGDEVLIQVSRLIKQGFHSLETQVYRYGGDEFFVLIPSIKPEKIRQKLDKLLIEVKKLLIPHKASTCSCYLS
ISVGIGYNKDPENQLSLNSLVNTADRALYQAKENGRNCYFELAHIKETMY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787802, Length=219, Percent_Identity=31.0502283105023, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1787262, Length=172, Percent_Identity=34.3023255813954, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1787816, Length=198, Percent_Identity=30.8080808080808, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=191, Percent_Identity=30.3664921465969, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=29.9435028248588, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87082007, Length=207, Percent_Identity=31.8840579710145, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787056, Length=155, Percent_Identity=32.258064516129, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=170, Percent_Identity=31.7647058823529, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=29.3103448275862, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 80029; Mature: 79898

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNQWNELLLEQVRQLPMASSKEHVQLRLNLLIVEASKQKKTIPTEFELIFQAYQLSRS
CCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC
GKLIDSISVFFDAINFSQQNQQEFLICFCHYNIGTLYGMLGNYFYAQKFLAKAEKMQQFC
CCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGYITGIIKNNIGDIFRQIGNFNEALIYLTQAAELLSQHGPKTAAALSYFNIAEIKAKQF
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LFTEANELLENLYQDIKNEPRYLGFYYKIKAEIASHSGEFEQADKLHLLSIENMQISEHD
HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHCCCCCCCCCCEEEEEECCCEECCCC
YYYAEMILEYCHFLTSCLQYKKLDQFIALGLAVAKKIESDKLIDGFNDIILLRIKDIDDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCCC
NIREKHYQTLTSSLLNSRRELLKREGDYLQQLYRLNVAKLNLSTMKSLSDNLAVINKVGH
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHH
YINTSSDIKNALPQIQQDLASLFQTDTLALGFYNSEQDQITIHYLDNNLPAQTPYITDCK
HCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCC
SEATYMSYCIKSNSAFYFNHMNSEQKVAMLGDRCDSKVQFKSAMFSPITINGEVKGVFTI
CCHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHCCCCEEECCEEEEEEEE
QARESYQYQTFHFELFSQLISYISIALENQYNRQQLLHLSQTDHLTQIWNRKSLEAHFNQ
EECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHCCCHHHHHHHH
LKQQQNQEYTGIMIDIDHYKEYNDTYGHIAGDEVLIQVSRLIKQGFHSLETQVYRYGGDE
HHHHCCCCCCEEEEEEHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCE
FFVLIPSIKPEKIRQKLDKLLIEVKKLLIPHKASTCSCYLSISVGIGYNKDPENQLSLNS
EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHH
LVNTADRALYQAKENGRNCYFELAHIKETMY
HHHHHHHHHHHHHHCCCCEEEEHHHHHHHCC
>Mature Secondary Structure 
AKNQWNELLLEQVRQLPMASSKEHVQLRLNLLIVEASKQKKTIPTEFELIFQAYQLSRS
CCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC
GKLIDSISVFFDAINFSQQNQQEFLICFCHYNIGTLYGMLGNYFYAQKFLAKAEKMQQFC
CCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGYITGIIKNNIGDIFRQIGNFNEALIYLTQAAELLSQHGPKTAAALSYFNIAEIKAKQF
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LFTEANELLENLYQDIKNEPRYLGFYYKIKAEIASHSGEFEQADKLHLLSIENMQISEHD
HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHHCCCCCCCCCCEEEEEECCCEECCCC
YYYAEMILEYCHFLTSCLQYKKLDQFIALGLAVAKKIESDKLIDGFNDIILLRIKDIDDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCCC
NIREKHYQTLTSSLLNSRRELLKREGDYLQQLYRLNVAKLNLSTMKSLSDNLAVINKVGH
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHH
YINTSSDIKNALPQIQQDLASLFQTDTLALGFYNSEQDQITIHYLDNNLPAQTPYITDCK
HCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCC
SEATYMSYCIKSNSAFYFNHMNSEQKVAMLGDRCDSKVQFKSAMFSPITINGEVKGVFTI
CCHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHCCCCEEECCEEEEEEEE
QARESYQYQTFHFELFSQLISYISIALENQYNRQQLLHLSQTDHLTQIWNRKSLEAHFNQ
EECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHCCCHHHHHHHH
LKQQQNQEYTGIMIDIDHYKEYNDTYGHIAGDEVLIQVSRLIKQGFHSLETQVYRYGGDE
HHHHCCCCCCEEEEEEHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCE
FFVLIPSIKPEKIRQKLDKLLIEVKKLLIPHKASTCSCYLSISVGIGYNKDPENQLSLNS
EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHH
LVNTADRALYQAKENGRNCYFELAHIKETMY
HHHHHHHHHHHHHHCCCCEEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]