| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
Click here to switch to the map view.
The map label for this gene is yggL [C]
Identifier: 59711746
GI number: 59711746
Start: 1262526
End: 1262948
Strand: Direct
Name: yggL [C]
Synonym: VF_1139
Alternate gene names: 59711746
Gene position: 1262526-1262948 (Clockwise)
Preceding gene: 59711744
Following gene: 59711748
Centisome position: 43.57
GC content: 37.59
Gene sequence:
>423_bases ATGGCATTTATTTTCAATCAACGCTTGGGTATTTGTGCTGAAAGGAGTATAACTACATCACATCTATCAAATGAGAGAAA AATGATGAAACTGAATAAGTTAGAAAACAAAAATCGTCGTATTCGTAAAAAACTGTACTTAGGTGAGTTTGCGATTCTTG GTTTCGAGGTGAGCTGTGCTACCGAGTTTAAAGATTTCGATCAATATGATGCATTCGTAGATGAGTTTATCGATTACATT AACAGTATTGACCTATGCTTTGGTGGCGGTGGCCTTGAGTTATTTGAAGGCTTTATTTGTTCAACAGAGCGTTACCGTTC AGTAACAGAAGAAGAGCAATTAGCGGTAGCAAACTGGTTGGACGCTCGTTCAGAAGTGAAGAAAGTCGAAGTGAGCGATT TAGTTGATGCTAACTATCTATAA
Upstream 100 bases:
>100_bases TGGCGCTCGGTTCTTATTTAAGCAGACTAATGCTAGATAAGATAAAAAATAATACCGGCAAGTTTTCGGTTTTCTTATGT TAGTAAGGGATCTTTATGTA
Downstream 100 bases:
>100_bases TTTTGATTCTCAATAAATCAGAATAAAAAAATCCGCCGATAATGGCGGATTTTTTATGAGTGCTATTTTTTCACACATAC CACGATGGCATTGCCTGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MAFIFNQRLGICAERSITTSHLSNERKMMKLNKLENKNRRIRKKLYLGEFAILGFEVSCATEFKDFDQYDAFVDEFIDYI NSIDLCFGGGGLELFEGFICSTERYRSVTEEEQLAVANWLDARSEVKKVEVSDLVDANYL
Sequences:
>Translated_140_residues MAFIFNQRLGICAERSITTSHLSNERKMMKLNKLENKNRRIRKKLYLGEFAILGFEVSCATEFKDFDQYDAFVDEFIDYI NSIDLCFGGGGLELFEGFICSTERYRSVTEEEQLAVANWLDARSEVKKVEVSDLVDANYL >Mature_139_residues AFIFNQRLGICAERSITTSHLSNERKMMKLNKLENKNRRIRKKLYLGEFAILGFEVSCATEFKDFDQYDAFVDEFIDYIN SIDLCFGGGGLELFEGFICSTERYRSVTEEEQLAVANWLDARSEVKKVEVSDLVDANYL
Specific function: Unknown
COG id: COG3171
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082190, Length=106, Percent_Identity=38.6792452830189, Blast_Score=61, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16193; Mature: 16061
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFIFNQRLGICAERSITTSHLSNERKMMKLNKLENKNRRIRKKLYLGEFAILGFEVSCA CCEEECCCCCCCCCCCHHHHHHHCHHHHHHHHHHHCHHHHHHHHHHHCCHHEEEEEEEHH TEFKDFDQYDAFVDEFIDYINSIDLCFGGGGLELFEGFICSTERYRSVTEEEQLAVANWL HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHH DARSEVKKVEVSDLVDANYL HHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AFIFNQRLGICAERSITTSHLSNERKMMKLNKLENKNRRIRKKLYLGEFAILGFEVSCA CEEECCCCCCCCCCCHHHHHHHCHHHHHHHHHHHCHHHHHHHHHHHCCHHEEEEEEEHH TEFKDFDQYDAFVDEFIDYINSIDLCFGGGGLELFEGFICSTERYRSVTEEEQLAVANWL HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHH DARSEVKKVEVSDLVDANYL HHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA