Click here to switch to the map view.

The map label for this gene is yajD [H]

Identifier: 59711708

GI number: 59711708

Start: 1215475

End: 1215819

Strand: Reverse

Name: yajD [H]

Synonym: VF_1101

Alternate gene names: 59711708

Gene position: 1215819-1215475 (Counterclockwise)

Preceding gene: 59711717

Following gene: 59711707

Centisome position: 41.96

GC content: 38.55

Gene sequence:

>345_bases
ATGTCATCTGATTTTTATGGCACTAGTGCCGCTTACGCTCGCCAAGAAAGTGGTTATCGTGAAAAAGCACTAAAATTATA
CCCTTGGGTTTGTGGCAATTGTGCTCGTGAATTTGTTTATTCAAATCTTCGTGAATTAACGGTTCACCATAAAGATCACG
ATCATACTAATAACCCAAGTGACGGCAGCAACTGGGAATTACTGTGTCTTTTCTGCCATGATCATGAACACTCTAAATAC
ACTGAACATGATCAATACGGCACTGAAATTAGAGCTGGTGAAGATGACCATAAAGCAGCAACACACAATCCATTTGCTGA
TCTAAAAGCAATGATGAAAAAATAA

Upstream 100 bases:

>100_bases
CTTTATTGACCATTCTATGTTTAGATGTGTATAGGTTATACATTTAGTTATTTTTTAAGTACAACGTTCAAAATTGAATG
GTTAAAAGGATACAAGAAAC

Downstream 100 bases:

>100_bases
TAATTAAAAATAATGGCCTTTAATTAAATAAAGGCCATATTAAATTTGGCTAGTTGTAAGAATGAAGATCGAAAACAGTC
CTGTAACACAACATGACTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSSDFYGTSAAYARQESGYREKALKLYPWVCGNCAREFVYSNLRELTVHHKDHDHTNNPSDGSNWELLCLFCHDHEHSKY
TEHDQYGTEIRAGEDDHKAATHNPFADLKAMMKK

Sequences:

>Translated_114_residues
MSSDFYGTSAAYARQESGYREKALKLYPWVCGNCAREFVYSNLRELTVHHKDHDHTNNPSDGSNWELLCLFCHDHEHSKY
TEHDQYGTEIRAGEDDHKAATHNPFADLKAMMKK
>Mature_113_residues
SSDFYGTSAAYARQESGYREKALKLYPWVCGNCAREFVYSNLRELTVHHKDHDHTNNPSDGSNWELLCLFCHDHEHSKYT
EHDQYGTEIRAGEDDHKAATHNPFADLKAMMKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786611, Length=106, Percent_Identity=81.1320754716981, Blast_Score=182, Evalue=4e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002711
- InterPro:   IPR003615
- InterPro:   IPR015880 [H]

Pfam domain/function: PF01844 HNH [H]

EC number: NA

Molecular weight: Translated: 13208; Mature: 13076

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSDFYGTSAAYARQESGYREKALKLYPWVCGNCAREFVYSNLRELTVHHKDHDHTNNPS
CCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DGSNWELLCLFCHDHEHSKYTEHDQYGTEIRAGEDDHKAATHNPFADLKAMMKK
CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
SSDFYGTSAAYARQESGYREKALKLYPWVCGNCAREFVYSNLRELTVHHKDHDHTNNPS
CCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DGSNWELLCLFCHDHEHSKYTEHDQYGTEIRAGEDDHKAATHNPFADLKAMMKK
CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]