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The map label for this gene is 59711603

Identifier: 59711603

GI number: 59711603

Start: 1098304

End: 1098795

Strand: Reverse

Name: 59711603

Synonym: VF_0996

Alternate gene names: NA

Gene position: 1098795-1098304 (Counterclockwise)

Preceding gene: 59711604

Following gene: 59711602

Centisome position: 37.92

GC content: 38.82

Gene sequence:

>492_bases
ATGAAAAAATTATTTACCTTCATAGCTCTATTATTACTCATTGGATGCAGCAGCACACCAGATCCAACTTACGTAGCGCT
TACTCTCAATGCCTCTGCAAATGTTAACCCTGATCATGCGGATCGCCCCTCGCCTCTAGTGGTAAGGGTATTAGAGTTAT
CTTCAATTACTGGCTTTGAAAACTCAGAATTTTTTGATTTATACAATAATGCAAAATCAACCTTAGGAGCGGATTTTATC
GCAGAAGAGGAAATCATCTTACGACCGGGCGATAAGAAAATCATCAAATTAAAGCTCAGTGAAAAAGGACAATATTTAGC
CGTTATCGGCGCTTATCAAGATATAGATAATGCAAAATGGCATTACATATACACAGTTGAGCCCGAAGAGGCACAAAAAG
TGGAATTGATCGCTACCGACTCTTCTATCGTCAAATTAAAACGCGTGAAAAAGAAAAAGAACGCACCACAAAGCAGTAAT
GCGCGAATTTAG

Upstream 100 bases:

>100_bases
GCAAGATTTTGCTAAACAATATGAATCTCAATTACAAATGCTCACAGCAGCACTTCGTGTGTAATTAGCGTAAAGAATTA
AGGATAAGGACGTATTCACT

Downstream 100 bases:

>100_bases
AGGATAGATAAATGCAAAAAGTTATATGGAAAGAAGGCATGCTATTGCGGCCTCAACATTTCCAACAAAGTGATCGTTAC
TATCAAAATCAACTGCAAGT

Product: lipoprotein

Products: NA

Alternate protein names: Type VI Secretion Lipoprotein; Type VI Secretion Lipoprotein/VasD; SciN Protein; Type VI Secretion Lipoprotein Family; Replication/Virulence Associated Protein; Outer Membrane Lipoprotein; Type VI Secretion Protein VasD

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MKKLFTFIALLLLIGCSSTPDPTYVALTLNASANVNPDHADRPSPLVVRVLELSSITGFENSEFFDLYNNAKSTLGADFI
AEEEIILRPGDKKIIKLKLSEKGQYLAVIGAYQDIDNAKWHYIYTVEPEEAQKVELIATDSSIVKLKRVKKKKNAPQSSN
ARI

Sequences:

>Translated_163_residues
MKKLFTFIALLLLIGCSSTPDPTYVALTLNASANVNPDHADRPSPLVVRVLELSSITGFENSEFFDLYNNAKSTLGADFI
AEEEIILRPGDKKIIKLKLSEKGQYLAVIGAYQDIDNAKWHYIYTVEPEEAQKVELIATDSSIVKLKRVKKKKNAPQSSN
ARI
>Mature_163_residues
MKKLFTFIALLLLIGCSSTPDPTYVALTLNASANVNPDHADRPSPLVVRVLELSSITGFENSEFFDLYNNAKSTLGADFI
AEEEIILRPGDKKIIKLKLSEKGQYLAVIGAYQDIDNAKWHYIYTVEPEEAQKVELIATDSSIVKLKRVKKKKNAPQSSN
ARI

Specific function: Unknown

COG id: COG3521

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18141; Mature: 18141

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLFTFIALLLLIGCSSTPDPTYVALTLNASANVNPDHADRPSPLVVRVLELSSITGFE
CHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEHHCCCCCC
NSEFFDLYNNAKSTLGADFIAEEEIILRPGDKKIIKLKLSEKGQYLAVIGAYQDIDNAKW
CCCEEEHHHCHHHHCCCCCEECCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCE
HYIYTVEPEEAQKVELIATDSSIVKLKRVKKKKNAPQSSNARI
EEEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKKLFTFIALLLLIGCSSTPDPTYVALTLNASANVNPDHADRPSPLVVRVLELSSITGFE
CHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEHHCCCCCC
NSEFFDLYNNAKSTLGADFIAEEEIILRPGDKKIIKLKLSEKGQYLAVIGAYQDIDNAKW
CCCEEEHHHCHHHHCCCCCEECCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCE
HYIYTVEPEEAQKVELIATDSSIVKLKRVKKKKNAPQSSNARI
EEEEEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA