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The map label for this gene is csgA [H]

Identifier: 59711577

GI number: 59711577

Start: 1063106

End: 1063816

Strand: Direct

Name: csgA [H]

Synonym: VF_0970

Alternate gene names: 59711577

Gene position: 1063106-1063816 (Clockwise)

Preceding gene: 59711576

Following gene: 59711578

Centisome position: 36.69

GC content: 36.57

Gene sequence:

>711_bases
ATGATGAATATACTCATTGTTGGAGGAAACGGTGGTATAGGTTTTGCGATGATAAAAGAGTGCCTTACTCAGTATTTAGA
TGCTCATATCCATGCAACTTATCGTCGAACTAAACCACGGTTTCAGCATGAAAGAGTGAGCTGGTATCAAGTCGATGTTA
GCCATGATGATGAAGTGAAATTATTCAGTGAATTATTTGATGATATCGATTGGGTGATTAATTGTGCTGGTATGTTACAT
ACATCAGATAAAGGGCCAGAGAAAAATTTAGGCGCATTAGATAGTGCTTATTTTCAGCAAATAATATTGGCAAATACATT
ACCAACGTTATTATTAGCCAAATATTTCACCCCAAAACTTAAAAGTACAAATCACCCTAAATTTGCCGTTATTTCTGCGA
AAGTAGGCAGCATTTCAGACAATGAATTTGGGGGATGGTATAGCTATAGAGCATCAAAAGCAGCGTTAAATATGTTCATT
AAAACCATGTCAATTGAATGGCGAAGAAGTATGAAAAATGGTGTGGTATTAGCTCTTCACCCGGGAACTACAGACACTGC
ATTGTCTAAGCCATTTCAAGCAAACGTTCCGCAAGATAAATTATTTTCACCAGAAAAAGTAGCATGTGATCTTATTGGGT
TGATGAAATCTAGTTCACCTCAAGATAGTGGTAAGTTTTTGGCTTATAATGGCGAAACTCTACCTTGGTAA

Upstream 100 bases:

>100_bases
AATCGTTATCGAGTGTCCTATTGGTTAACGGGAGTATCTCGTTGCAATAAAACCAGTTGTTCAAAATAGATTGTGATGTG
ACAGAGCTTTACGAGGAATC

Downstream 100 bases:

>100_bases
TAAATCAGTTACTTTGCAACAGATCGATACATCACCATGCTTTACTCAGTCTACGTTTACAGTGTTATATCTATGAGCTC
TCACCAACCAAAAGATTATT

Product: C factor cell-cell signaling protein

Products: NA

Alternate protein names: C signal [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MMNILIVGGNGGIGFAMIKECLTQYLDAHIHATYRRTKPRFQHERVSWYQVDVSHDDEVKLFSELFDDIDWVINCAGMLH
TSDKGPEKNLGALDSAYFQQIILANTLPTLLLAKYFTPKLKSTNHPKFAVISAKVGSISDNEFGGWYSYRASKAALNMFI
KTMSIEWRRSMKNGVVLALHPGTTDTALSKPFQANVPQDKLFSPEKVACDLIGLMKSSSPQDSGKFLAYNGETLPW

Sequences:

>Translated_236_residues
MMNILIVGGNGGIGFAMIKECLTQYLDAHIHATYRRTKPRFQHERVSWYQVDVSHDDEVKLFSELFDDIDWVINCAGMLH
TSDKGPEKNLGALDSAYFQQIILANTLPTLLLAKYFTPKLKSTNHPKFAVISAKVGSISDNEFGGWYSYRASKAALNMFI
KTMSIEWRRSMKNGVVLALHPGTTDTALSKPFQANVPQDKLFSPEKVACDLIGLMKSSSPQDSGKFLAYNGETLPW
>Mature_236_residues
MMNILIVGGNGGIGFAMIKECLTQYLDAHIHATYRRTKPRFQHERVSWYQVDVSHDDEVKLFSELFDDIDWVINCAGMLH
TSDKGPEKNLGALDSAYFQQIILANTLPTLLLAKYFTPKLKSTNHPKFAVISAKVGSISDNEFGGWYSYRASKAALNMFI
KTMSIEWRRSMKNGVVLALHPGTTDTALSKPFQANVPQDKLFSPEKVACDLIGLMKSSSPQDSGKFLAYNGETLPW

Specific function: Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation [H]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To yeast YKL071W [H]

Homologues:

Organism=Caenorhabditis elegans, GI72001658, Length=203, Percent_Identity=27.0935960591133, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: NA

Molecular weight: Translated: 26400; Mature: 26400

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNILIVGGNGGIGFAMIKECLTQYLDAHIHATYRRTKPRFQHERVSWYQVDVSHDDEVK
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHH
LFSELFDDIDWVINCAGMLHTSDKGPEKNLGALDSAYFQQIILANTLPTLLLAKYFTPKL
HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KSTNHPKFAVISAKVGSISDNEFGGWYSYRASKAALNMFIKTMSIEWRRSMKNGVVLALH
CCCCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
PGTTDTALSKPFQANVPQDKLFSPEKVACDLIGLMKSSSPQDSGKFLAYNGETLPW
CCCCHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MMNILIVGGNGGIGFAMIKECLTQYLDAHIHATYRRTKPRFQHERVSWYQVDVSHDDEVK
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHH
LFSELFDDIDWVINCAGMLHTSDKGPEKNLGALDSAYFQQIILANTLPTLLLAKYFTPKL
HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KSTNHPKFAVISAKVGSISDNEFGGWYSYRASKAALNMFIKTMSIEWRRSMKNGVVLALH
CCCCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
PGTTDTALSKPFQANVPQDKLFSPEKVACDLIGLMKSSSPQDSGKFLAYNGETLPW
CCCCHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152896; 2107980; 2118510; 1372277 [H]