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The map label for this gene is ybgC [H]

Identifier: 59711564

GI number: 59711564

Start: 1052309

End: 1052719

Strand: Direct

Name: ybgC [H]

Synonym: VF_0957

Alternate gene names: 59711564

Gene position: 1052309-1052719 (Clockwise)

Preceding gene: 59711563

Following gene: 59711565

Centisome position: 36.32

GC content: 36.01

Gene sequence:

>411_bases
ATGAATACGAATCCATTTAAATGGCCTATAACCATTTATTATGAAGATACCGATGCTGGTGGCGTTGTATATCATTCAAA
CTACCTTAAGTTCTTTGAGCGTGCACGAACTGAACTATTACGAGACAAAGGGGTCTCCCAACAAGTAATGTTGAATGAAT
CTATAGGCTTTGTTGTAAAGAGTTTACAGATTGATTTCATTTCAGCAGCTCGTTTAGATGAACAACTTATTGTTGAAACA
TTAGTAACAGAAATTAAAAAAGTATCGCTAACCTTTTGTCAAATATTGGTTAATTCTGACGGTAAAGTATTGTGCAAAGC
TACGGTTAAGGTAGCCTGTGTCGATAATTCAGTTATGAAACCAACGGCGATCCCATCGTTTATTTTATCGGAGATATCTT
GTGACAGGTGA

Upstream 100 bases:

>100_bases
TTTACGATTTAACCTCAAAATGTAAATATCATATAGTTACCTAGGGTTAAGATCAGTTATAGTTAGCAATTGATTTTTCA
ATAATAATGAGAAAGGTGAG

Downstream 100 bases:

>100_bases
ACTATCAATTCTCGATCTATTTTTACAAGCTAGTTTATTAGTTAAGATCGTGATGCTTATTCTATTAAGCTTGTCTGTAA
TTTCATGGGCGATGATCTTT

Product: acyl-CoA thioesterase

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MNTNPFKWPITIYYEDTDAGGVVYHSNYLKFFERARTELLRDKGVSQQVMLNESIGFVVKSLQIDFISAARLDEQLIVET
LVTEIKKVSLTFCQILVNSDGKVLCKATVKVACVDNSVMKPTAIPSFILSEISCDR

Sequences:

>Translated_136_residues
MNTNPFKWPITIYYEDTDAGGVVYHSNYLKFFERARTELLRDKGVSQQVMLNESIGFVVKSLQIDFISAARLDEQLIVET
LVTEIKKVSLTFCQILVNSDGKVLCKATVKVACVDNSVMKPTAIPSFILSEISCDR
>Mature_136_residues
MNTNPFKWPITIYYEDTDAGGVVYHSNYLKFFERARTELLRDKGVSQQVMLNESIGFVVKSLQIDFISAARLDEQLIVET
LVTEIKKVSLTFCQILVNSDGKVLCKATVKVACVDNSVMKPTAIPSFILSEISCDR

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=131, Percent_Identity=48.0916030534351, Blast_Score=147, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15301; Mature: 15301

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTNPFKWPITIYYEDTDAGGVVYHSNYLKFFERARTELLRDKGVSQQVMLNESIGFVVK
CCCCCEEEEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHH
SLQIDFISAARLDEQLIVETLVTEIKKVSLTFCQILVNSDGKVLCKATVKVACVDNSVMK
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEEEEECCCCCCC
PTAIPSFILSEISCDR
CCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNTNPFKWPITIYYEDTDAGGVVYHSNYLKFFERARTELLRDKGVSQQVMLNESIGFVVK
CCCCCEEEEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHH
SLQIDFISAARLDEQLIVETLVTEIKKVSLTFCQILVNSDGKVLCKATVKVACVDNSVMK
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEEEEECCCCCCC
PTAIPSFILSEISCDR
CCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]