| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is adhE [H]
Identifier: 59711525
GI number: 59711525
Start: 1012473
End: 1014974
Strand: Direct
Name: adhE [H]
Synonym: VF_0918
Alternate gene names: 59711525
Gene position: 1012473-1014974 (Clockwise)
Preceding gene: 172087679
Following gene: 59711529
Centisome position: 34.94
GC content: 42.65
Gene sequence:
>2502_bases ATGGGTATCGTTGAAGATAAGGTTATCAAAAACCACTTCGCATCAGAGTTCATCTACAACAAATATAAAGATGAAAAAAC ATGTGGCATTCTTGAAGAAGACGATAACCTAGGAACAATGACTATCGCAGAACCTGTAGGTATTATCTGTGGTATCGTTC CAACAACTAACCCAACATCTACTGCAATCTTCAAATCTCTAATCTCTCTAAAAACTCGTAACGGTATCATTTTCTCGCCA CACCCACGTGCGAAAAACTCTACTAATGATGCAGCGAAACTTGTTTTAGACGCAGCAGTTGCAGCTGGTGCTCCAAAAGA CATCATCGGTTGGATTGATCAACCATCTGTAGAACTTTCTAATGCACTAATGAAGCACGACGGTATCGCTCTTATCCTTG CTACTGGTGGTCCAGGCATGGTTAAAGCAGCATACTCTTCAGGTAAACCTGCAATCGGTGTTGGTGCTGGTAACGTTCCT GTTGTTATCGATGACACAGCTGATGTTAAACGTGCAGTCGCTTCTGTTCTTATGTCTAAAACATTCGATAACGGCGTAGT TTGTGCTTCTGAGCAAGCTGTAATCGTAATGGATGAAGTATACGACGAAGTTAAAGAGCGTTTTGCTTCTCACAAAGGTT ACGTACTATCTAAAGCTGAAGCAGATAAAGTTCGTAAAGTTCTACTTATCGACGGTAACCTAAACGCAAACATCGTAGGT CAACCTGCAACAGCTATCGCTGAAATGGCTGGCGTTAAAGTTCCAGCTGATACTAAGATCCTTGTTGGTGAAGGTATCGG TGAAGTATCTTACGATGACGAATTCGCTCATGAGAAACTATCTCCAACACTAGGTATGTTCCGTGCGTCTTCTTTCGAGA ACGCGGTAGACCAAGCTGTTAAAATGGTAGAAATTGGCGGTATCGGCCACACATCTGGTCTGTACACTAACCAAGATGTT AACGCTGACCGTATCCGTTACTTTGGTGACAAACTAAAAACAGCACGTATTCTTGTAAACATCCCAACTACTCACGGTGG TATCGGTGACCTTTACAACTTTAACGTTGCACCTTCTCTAACTCTTGGTTGTGGTTCATGGGGTGGTAACTCTATCTCTG AGAACGTGGGTCCTAAGCACCTTATCAACAAGAAAACTGTAGCGAAGCGAGCTGAAAATATGTTATGGCACAAACTACCT AAGTCTATCTACTTCCGTCGTGGCAGCCTTCCAATCGCAATGAGCGACCTAGAAGGTAAGAAACGTGCATTCCTTGTAAC TGACCGTTTCCTATTCAACAACGGTTACGCTGATGACGTAGTTCAACTACTTAAAGCTCAAGGTATCGAAGTTCAAACAT TCTTTGATGTAGAAGCGGATCCAACACTATCTGTTGTTGAGAAAGGCGCTGAAGCAATGAAGAGCTTCCAACCTGACGTA ATCCTTGCTCTAGGTGGTGGTTCACCAATGGATGCTGCTAAGATTATGTGGGTAATGTACGAGCACCCAGAAACTCATTT CGCAGAACTAGCAATGCGCTTTATGGATATCCGTAAACGTATCTACAAGTTCCCTAAAATGGGTAAAAAAGCTGAGCTTG TATGTATCACTACAACTTCAGGTACTGGTTCAGAAGTTACTCCATTCGCTGTTGTTACAGACGACAAGACTGGTGCTAAA TACCCACTAGCTGATTACGAAATTACGCCAAACATGGCAATCGTTGATGCTAACCTAGTAATGAACATGCCTAAGTCTCT AACCGCATTTGGTGGTTACGATGCAGTAACTCACGCATTAGAAGCTTACGTATCTGTTCTTGCTAATGAATACTCTGACG GTCAAGCGCTTCAAGCTCTTAAGATGCTTAAAGAATACTTACCATCAAGCTACAAAAATGGTGCGAACGACCCAATCGCT CGTGAGAAAGTACACAATGCTGCAACTATCGCTGGTATCGCGTTTGCTAACGCATTCCTAGGTGTGTGTCACTCAATGGC TCACAAAATCGGTGCTGAGTTCCACTTACCACACGGTTTAGCTAACGCATTACTTATCTCTAACGTTGTACGTTACAATG CGAACGATAACCCAACTAAACAAACAGCATTCTCTCAGTACGACCGTCCACAAGCACGTCGTCGTTACGCAGAAGTTGCT GACCACCTAGGCCTAAGCCAAGCTGGTGACCGTACTGCTCAGAAGATTGAGCGTCTACTAACTTGGTTAGAAGAGCTTAA GAAAGATTTAGATATTCCACTATCTATCAAAGATGCAGGTGTTAACGAAGCAGACTTCATCGCTAAACTAGATGAACTAT CTGTTGAAGCGTTCGATGACCAATGTACTGGTGCGAACCCACGTTACCCTCTAATCACAGAGCTAAAAGAAGTACTAACA ACTTCTTACTACGGTAAACCTTTTGTTGAAGGTGAAACGTTTGAAGGCACAACAGTAATTAAAAAAACTGAAGAGCCAAA AGCGAAAAAAGCAAAGAAATAA
Upstream 100 bases:
>100_bases TTTTTCTCAAGAGCAAGTTGATGCAATCTTCCGTGCAGCATCTCTAGCAGCTAACCAAGCTCGTATCCCGCTAGCACAAC AAGCGGTTGCTGAGTCTGGC
Downstream 100 bases:
>100_bases TTGATTGCTAAACGCTGAGTTACTTTCACTAGCAATTTGAAAGTGATAAATAAGAAAGCCACCTAATATTAGGTGGCTTT TTTGCATCTAGAGGTTTGTG
Product: fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase
Products: NA
Alternate protein names: Alcohol dehydrogenase; ADH; Acetaldehyde dehydrogenase [acetylating]; ACDH; Pyruvate-formate-lyase deactivase; PFL deactivase [H]
Number of amino acids: Translated: 833; Mature: 832
Protein sequence:
>833_residues MGIVEDKVIKNHFASEFIYNKYKDEKTCGILEEDDNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSP HPRAKNSTNDAAKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDGIALILATGGPGMVKAAYSSGKPAIGVGAGNVP VVIDDTADVKRAVASVLMSKTFDNGVVCASEQAVIVMDEVYDEVKERFASHKGYVLSKAEADKVRKVLLIDGNLNANIVG QPATAIAEMAGVKVPADTKILVGEGIGEVSYDDEFAHEKLSPTLGMFRASSFENAVDQAVKMVEIGGIGHTSGLYTNQDV NADRIRYFGDKLKTARILVNIPTTHGGIGDLYNFNVAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLP KSIYFRRGSLPIAMSDLEGKKRAFLVTDRFLFNNGYADDVVQLLKAQGIEVQTFFDVEADPTLSVVEKGAEAMKSFQPDV ILALGGGSPMDAAKIMWVMYEHPETHFAELAMRFMDIRKRIYKFPKMGKKAELVCITTTSGTGSEVTPFAVVTDDKTGAK YPLADYEITPNMAIVDANLVMNMPKSLTAFGGYDAVTHALEAYVSVLANEYSDGQALQALKMLKEYLPSSYKNGANDPIA REKVHNAATIAGIAFANAFLGVCHSMAHKIGAEFHLPHGLANALLISNVVRYNANDNPTKQTAFSQYDRPQARRRYAEVA DHLGLSQAGDRTAQKIERLLTWLEELKKDLDIPLSIKDAGVNEADFIAKLDELSVEAFDDQCTGANPRYPLITELKEVLT TSYYGKPFVEGETFEGTTVIKKTEEPKAKKAKK
Sequences:
>Translated_833_residues MGIVEDKVIKNHFASEFIYNKYKDEKTCGILEEDDNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSP HPRAKNSTNDAAKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDGIALILATGGPGMVKAAYSSGKPAIGVGAGNVP VVIDDTADVKRAVASVLMSKTFDNGVVCASEQAVIVMDEVYDEVKERFASHKGYVLSKAEADKVRKVLLIDGNLNANIVG QPATAIAEMAGVKVPADTKILVGEGIGEVSYDDEFAHEKLSPTLGMFRASSFENAVDQAVKMVEIGGIGHTSGLYTNQDV NADRIRYFGDKLKTARILVNIPTTHGGIGDLYNFNVAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLP KSIYFRRGSLPIAMSDLEGKKRAFLVTDRFLFNNGYADDVVQLLKAQGIEVQTFFDVEADPTLSVVEKGAEAMKSFQPDV ILALGGGSPMDAAKIMWVMYEHPETHFAELAMRFMDIRKRIYKFPKMGKKAELVCITTTSGTGSEVTPFAVVTDDKTGAK YPLADYEITPNMAIVDANLVMNMPKSLTAFGGYDAVTHALEAYVSVLANEYSDGQALQALKMLKEYLPSSYKNGANDPIA REKVHNAATIAGIAFANAFLGVCHSMAHKIGAEFHLPHGLANALLISNVVRYNANDNPTKQTAFSQYDRPQARRRYAEVA DHLGLSQAGDRTAQKIERLLTWLEELKKDLDIPLSIKDAGVNEADFIAKLDELSVEAFDDQCTGANPRYPLITELKEVLT TSYYGKPFVEGETFEGTTVIKKTEEPKAKKAKK >Mature_832_residues GIVEDKVIKNHFASEFIYNKYKDEKTCGILEEDDNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSPH PRAKNSTNDAAKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDGIALILATGGPGMVKAAYSSGKPAIGVGAGNVPV VIDDTADVKRAVASVLMSKTFDNGVVCASEQAVIVMDEVYDEVKERFASHKGYVLSKAEADKVRKVLLIDGNLNANIVGQ PATAIAEMAGVKVPADTKILVGEGIGEVSYDDEFAHEKLSPTLGMFRASSFENAVDQAVKMVEIGGIGHTSGLYTNQDVN ADRIRYFGDKLKTARILVNIPTTHGGIGDLYNFNVAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPK SIYFRRGSLPIAMSDLEGKKRAFLVTDRFLFNNGYADDVVQLLKAQGIEVQTFFDVEADPTLSVVEKGAEAMKSFQPDVI LALGGGSPMDAAKIMWVMYEHPETHFAELAMRFMDIRKRIYKFPKMGKKAELVCITTTSGTGSEVTPFAVVTDDKTGAKY PLADYEITPNMAIVDANLVMNMPKSLTAFGGYDAVTHALEAYVSVLANEYSDGQALQALKMLKEYLPSSYKNGANDPIAR EKVHNAATIAGIAFANAFLGVCHSMAHKIGAEFHLPHGLANALLISNVVRYNANDNPTKQTAFSQYDRPQARRRYAEVAD HLGLSQAGDRTAQKIERLLTWLEELKKDLDIPLSIKDAGVNEADFIAKLDELSVEAFDDQCTGANPRYPLITELKEVLTT SYYGKPFVEGETFEGTTVIKKTEEPKAKKAKK
Specific function: This enzyme has three activities:ADH, ACDH, and PFL- deactivase. In aerobic conditions it acts as a hydrogen peroxide scavenger. The PFL deactivase activity catalyzes the quenching of the pyruvate-formate-lyase catalyst in an iron, NAD, and CoA dependent
COG id: COG1454
COG function: function code C; Alcohol dehydrogenase, class IV
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the iron- containing alcohol dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI133922590, Length=385, Percent_Identity=26.7532467532467, Blast_Score=90, Evalue=1e-17, Organism=Escherichia coli, GI1787493, Length=815, Percent_Identity=77.4233128834356, Blast_Score=1325, Evalue=0.0, Organism=Escherichia coli, GI48994951, Length=371, Percent_Identity=35.3099730458221, Blast_Score=203, Evalue=3e-53, Organism=Escherichia coli, GI1789163, Length=408, Percent_Identity=30.6372549019608, Blast_Score=191, Evalue=1e-49, Organism=Escherichia coli, GI87082107, Length=371, Percent_Identity=31.5363881401617, Blast_Score=186, Evalue=4e-48, Organism=Escherichia coli, GI1788797, Length=360, Percent_Identity=32.7777777777778, Blast_Score=172, Evalue=1e-43, Organism=Escherichia coli, GI1789386, Length=353, Percent_Identity=24.6458923512748, Blast_Score=70, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17537053, Length=387, Percent_Identity=25.3229974160207, Blast_Score=114, Evalue=3e-25, Organism=Caenorhabditis elegans, GI25143874, Length=313, Percent_Identity=23.0031948881789, Blast_Score=69, Evalue=9e-12, Organism=Caenorhabditis elegans, GI25143876, Length=313, Percent_Identity=23.0031948881789, Blast_Score=69, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6321181, Length=393, Percent_Identity=30.7888040712468, Blast_Score=184, Evalue=6e-47, Organism=Drosophila melanogaster, GI24657991, Length=321, Percent_Identity=26.1682242990654, Blast_Score=80, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001670 - InterPro: IPR018211 - InterPro: IPR016161 - InterPro: IPR016163 - InterPro: IPR016162 - InterPro: IPR015590 - InterPro: IPR012079 [H]
Pfam domain/function: PF00171 Aldedh; PF00465 Fe-ADH [H]
EC number: =1.1.1.1; =1.2.1.10 [H]
Molecular weight: Translated: 90331; Mature: 90200
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS00913 ADH_IRON_1 ; PS00060 ADH_IRON_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIVEDKVIKNHFASEFIYNKYKDEKTCGILEEDDNLGTMTIAEPVGIICGIVPTTNPTS CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCEEECCCCCCCHH TAIFKSLISLKTRNGIIFSPHPRAKNSTNDAAKLVLDAAVAAGAPKDIIGWIDQPSVELS HHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHH NALMKHDGIALILATGGPGMVKAAYSSGKPAIGVGAGNVPVVIDDTADVKRAVASVLMSK HHHHHCCCEEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHH TFDNGVVCASEQAVIVMDEVYDEVKERFASHKGYVLSKAEADKVRKVLLIDGNLNANIVG CCCCCEEEECCCEEEEHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCEEEC QPATAIAEMAGVKVPADTKILVGEGIGEVSYDDEFAHEKLSPTLGMFRASSFENAVDQAV CCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH KMVEIGGIGHTSGLYTNQDVNADRIRYFGDKLKTARILVNIPTTHGGIGDLYNFNVAPSL HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCE TLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIAMSDLEGK EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCEEECCCCCC KRAFLVTDRFLFNNGYADDVVQLLKAQGIEVQTFFDVEADPTLSVVEKGAEAMKSFQPDV CEEEEEEEHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCE ILALGGGSPMDAAKIMWVMYEHPETHFAELAMRFMDIRKRIYKFPKMGKKAELVCITTTS EEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC GTGSEVTPFAVVTDDKTGAKYPLADYEITPNMAIVDANLVMNMPKSLTAFGGYDAVTHAL CCCCCCCCEEEEECCCCCCCCCCCCEEECCCEEEEECHHHHCCCCHHHHCCCHHHHHHHH EAYVSVLANEYSDGQALQALKMLKEYLPSSYKNGANDPIAREKVHNAATIAGIAFANAFL HHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH GVCHSMAHKIGAEFHLPHGLANALLISNVVRYNANDNPTKQTAFSQYDRPQARRRYAEVA HHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHH DHLGLSQAGDRTAQKIERLLTWLEELKKDLDIPLSIKDAGVNEADFIAKLDELSVEAFDD HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC QCTGANPRYPLITELKEVLTTSYYGKPFVEGETFEGTTVIKKTEEPKAKKAKK CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHCCCC >Mature Secondary Structure GIVEDKVIKNHFASEFIYNKYKDEKTCGILEEDDNLGTMTIAEPVGIICGIVPTTNPTS CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEECCCCCCEEECCCCCCCHH TAIFKSLISLKTRNGIIFSPHPRAKNSTNDAAKLVLDAAVAAGAPKDIIGWIDQPSVELS HHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHH NALMKHDGIALILATGGPGMVKAAYSSGKPAIGVGAGNVPVVIDDTADVKRAVASVLMSK HHHHHCCCEEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHH TFDNGVVCASEQAVIVMDEVYDEVKERFASHKGYVLSKAEADKVRKVLLIDGNLNANIVG CCCCCEEEECCCEEEEHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCEEEC QPATAIAEMAGVKVPADTKILVGEGIGEVSYDDEFAHEKLSPTLGMFRASSFENAVDQAV CCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH KMVEIGGIGHTSGLYTNQDVNADRIRYFGDKLKTARILVNIPTTHGGIGDLYNFNVAPSL HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCE TLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIAMSDLEGK EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCEEECCCCCC KRAFLVTDRFLFNNGYADDVVQLLKAQGIEVQTFFDVEADPTLSVVEKGAEAMKSFQPDV CEEEEEEEHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCE ILALGGGSPMDAAKIMWVMYEHPETHFAELAMRFMDIRKRIYKFPKMGKKAELVCITTTS EEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC GTGSEVTPFAVVTDDKTGAKYPLADYEITPNMAIVDANLVMNMPKSLTAFGGYDAVTHAL CCCCCCCCEEEEECCCCCCCCCCCCEEECCCEEEEECHHHHCCCCHHHHCCCHHHHHHHH EAYVSVLANEYSDGQALQALKMLKEYLPSSYKNGANDPIAREKVHNAATIAGIAFANAFL HHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH GVCHSMAHKIGAEFHLPHGLANALLISNVVRYNANDNPTKQTAFSQYDRPQARRRYAEVA HHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHH DHLGLSQAGDRTAQKIERLLTWLEELKKDLDIPLSIKDAGVNEADFIAKLDELSVEAFDD HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC QCTGANPRYPLITELKEVLTTSYYGKPFVEGETFEGTTVIKKTEEPKAKKAKK CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]