Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 59711438

GI number: 59711438

Start: 912725

End: 914065

Strand: Direct

Name: yebA [H]

Synonym: VF_0831

Alternate gene names: 59711438

Gene position: 912725-914065 (Clockwise)

Preceding gene: 59711437

Following gene: 59711439

Centisome position: 31.5

GC content: 38.7

Gene sequence:

>1341_bases
ATGAAGTATAAAGAAGTATTAGCAGCTCGAATTAATTCACTATCGAAAAGGCATAAGCTTGTTTTAATGTCTTTGTCTCT
TTTTACGGTAGTTGTTTTTATTTGGGAACCGACACATAGCATTAGTCAAAGTCTTTCGGAACCATCTCGAAGCACTGTGA
CATTGTCGAGTGAGAATCTACAAACATTAGCAGATCAGAATAGTGAACCTGTAGAAACGATTTTTGATCCTAATGATCCA
GAATTTAATGCCCCTAAAGATGAATTAGATAAGCACATTAATGCTGAAGATATCGTTCATTCACATACCGTTGATGCGGG
TGAAACGTTAGGCGCTATTTTTAATCAATACGCATTATCTATTTCAGATATGTATGCACTTCTTGATGTAAATAAATCAG
CGGCGAATATGCGAGTTGGTGTTGATCTTGAGTGGCAGCAAGATGAAGATGGGAAATTAACCGAGTTAAAAATCCATCGA
AACATTAAAGATACGGATGTGTATGCTTGGAATGGTGAAAAATATACTTTCACTCAGATTGAAGAGAAGGGTGAGATAAA
ACCCGTATTCCTTTCAGGTAGAGTAACAAGTAATTTTTATAATTCAGCACGTTCAGCTGGGTTAACGCCTGGTCAAATTC
AAACACTTGCAAAACAGCTCCAATGGAAATTTGATTTTGGTAAAGAAGCTCGCAAAGGCGACCGATTTGCCGTTGAAATT
GATAAAGAGTTTATCGATGGGAAAGCCGTTTCATCTGGTGATGTAAAAGCCGTGCTATACAAAAATGCAGGTCGTGATAT
CACACTAATTAAACACACTGACGGACATTATTATGATGTTCAAGGTCGTAGTTTAAATCGAGCATTAGAGCGTTTTCCTA
CTCATCAACGCTACAGAATTAGTTCACCGTTTAACCCATATCGTAAGCATCCAATAACGGGAAGAATTTCGCCTCATAAT
GGTACTGATTTTGCCACTCCAGTAGGAACATCTGTTTATGCAACGGGCGATGGTGTTGTAGTTCGAGCATTGCATCACCC
ACTTGCAGGTAACTACATCATTATTAAACATGGGCGTGAATACATGACTCGCTATCTTCATTTAAGTAAGATCTTAGTGA
AGAAAGGACAAAAAGTATCAATGGGAGACAAGATAGCGCTAAGTGGTAATACAGGCCGTTCAACAGGACCTCACTTGCAC
TATGAACTAATTAAAAATGGTCGAGCAGTTAATGCCATGAAGGTACCTTTACCTCAGGCATCTCCAGTAAAAAGTGATGA
GCGAGCTCGTTTTAAACAACAAGCTAAGCTAACGATTGAAGCACTGCAAGAGCAGGTCTAA

Upstream 100 bases:

>100_bases
GTGAATTAGATCCTTTAGCCATACAGCAAGATGAAGTTCCGGGTGCTTATTTTAATTTCTTATTAACCATCAGTAACGAG
CTAGAAAGTTGTCTAAATCA

Downstream 100 bases:

>100_bases
CTGTTTAGATAAACATAATTATATAAAGCCCTGCATATATTAATATGACAGGGCTTTTTTATATCCTTTATCTATGCATT
GATTGCTATATAGACGGAGT

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MKYKEVLAARINSLSKRHKLVLMSLSLFTVVVFIWEPTHSISQSLSEPSRSTVTLSSENLQTLADQNSEPVETIFDPNDP
EFNAPKDELDKHINAEDIVHSHTVDAGETLGAIFNQYALSISDMYALLDVNKSAANMRVGVDLEWQQDEDGKLTELKIHR
NIKDTDVYAWNGEKYTFTQIEEKGEIKPVFLSGRVTSNFYNSARSAGLTPGQIQTLAKQLQWKFDFGKEARKGDRFAVEI
DKEFIDGKAVSSGDVKAVLYKNAGRDITLIKHTDGHYYDVQGRSLNRALERFPTHQRYRISSPFNPYRKHPITGRISPHN
GTDFATPVGTSVYATGDGVVVRALHHPLAGNYIIIKHGREYMTRYLHLSKILVKKGQKVSMGDKIALSGNTGRSTGPHLH
YELIKNGRAVNAMKVPLPQASPVKSDERARFKQQAKLTIEALQEQV

Sequences:

>Translated_446_residues
MKYKEVLAARINSLSKRHKLVLMSLSLFTVVVFIWEPTHSISQSLSEPSRSTVTLSSENLQTLADQNSEPVETIFDPNDP
EFNAPKDELDKHINAEDIVHSHTVDAGETLGAIFNQYALSISDMYALLDVNKSAANMRVGVDLEWQQDEDGKLTELKIHR
NIKDTDVYAWNGEKYTFTQIEEKGEIKPVFLSGRVTSNFYNSARSAGLTPGQIQTLAKQLQWKFDFGKEARKGDRFAVEI
DKEFIDGKAVSSGDVKAVLYKNAGRDITLIKHTDGHYYDVQGRSLNRALERFPTHQRYRISSPFNPYRKHPITGRISPHN
GTDFATPVGTSVYATGDGVVVRALHHPLAGNYIIIKHGREYMTRYLHLSKILVKKGQKVSMGDKIALSGNTGRSTGPHLH
YELIKNGRAVNAMKVPLPQASPVKSDERARFKQQAKLTIEALQEQV
>Mature_446_residues
MKYKEVLAARINSLSKRHKLVLMSLSLFTVVVFIWEPTHSISQSLSEPSRSTVTLSSENLQTLADQNSEPVETIFDPNDP
EFNAPKDELDKHINAEDIVHSHTVDAGETLGAIFNQYALSISDMYALLDVNKSAANMRVGVDLEWQQDEDGKLTELKIHR
NIKDTDVYAWNGEKYTFTQIEEKGEIKPVFLSGRVTSNFYNSARSAGLTPGQIQTLAKQLQWKFDFGKEARKGDRFAVEI
DKEFIDGKAVSSGDVKAVLYKNAGRDITLIKHTDGHYYDVQGRSLNRALERFPTHQRYRISSPFNPYRKHPITGRISPHN
GTDFATPVGTSVYATGDGVVVRALHHPLAGNYIIIKHGREYMTRYLHLSKILVKKGQKVSMGDKIALSGNTGRSTGPHLH
YELIKNGRAVNAMKVPLPQASPVKSDERARFKQQAKLTIEALQEQV

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=440, Percent_Identity=40.2272727272727, Blast_Score=329, Evalue=3e-91,
Organism=Escherichia coli, GI1789099, Length=102, Percent_Identity=41.1764705882353, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082174, Length=124, Percent_Identity=35.4838709677419, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 50045; Mature: 50045

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKEVLAARINSLSKRHKLVLMSLSLFTVVVFIWEPTHSISQSLSEPSRSTVTLSSENL
CCHHHHHHHHHHHHHHHHEEEEEHHHHHEEEEEEECCCHHHHHHHCCCCCCEEEECCCCH
QTLADQNSEPVETIFDPNDPEFNAPKDELDKHINAEDIVHSHTVDAGETLGAIFNQYALS
HHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
ISDMYALLDVNKSAANMRVGVDLEWQQDEDGKLTELKIHRNIKDTDVYAWNGEKYTFTQI
HHHEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCEEEEEEE
EEKGEIKPVFLSGRVTSNFYNSARSAGLTPGQIQTLAKQLQWKFDFGKEARKGDRFAVEI
CCCCCEEEEEEECEEHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCCCCEEEEEE
DKEFIDGKAVSSGDVKAVLYKNAGRDITLIKHTDGHYYDVQGRSLNRALERFPTHQRYRI
CHHHCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEECCCHHHHHHHHCCCCCEEEE
SSPFNPYRKHPITGRISPHNGTDFATPVGTSVYATGDGVVVRALHHPLAGNYIIIKHGRE
CCCCCHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCHH
YMTRYLHLSKILVKKGQKVSMGDKIALSGNTGRSTGPHLHYELIKNGRAVNAMKVPLPQA
HHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCCCCCEEHHHHHCCCEEEEEECCCCCC
SPVKSDERARFKQQAKLTIEALQEQV
CCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKYKEVLAARINSLSKRHKLVLMSLSLFTVVVFIWEPTHSISQSLSEPSRSTVTLSSENL
CCHHHHHHHHHHHHHHHHEEEEEHHHHHEEEEEEECCCHHHHHHHCCCCCCEEEECCCCH
QTLADQNSEPVETIFDPNDPEFNAPKDELDKHINAEDIVHSHTVDAGETLGAIFNQYALS
HHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
ISDMYALLDVNKSAANMRVGVDLEWQQDEDGKLTELKIHRNIKDTDVYAWNGEKYTFTQI
HHHEEEEEECCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCCEEEEEEE
EEKGEIKPVFLSGRVTSNFYNSARSAGLTPGQIQTLAKQLQWKFDFGKEARKGDRFAVEI
CCCCCEEEEEEECEEHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCCCCEEEEEE
DKEFIDGKAVSSGDVKAVLYKNAGRDITLIKHTDGHYYDVQGRSLNRALERFPTHQRYRI
CHHHCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEECCCHHHHHHHHCCCCCEEEE
SSPFNPYRKHPITGRISPHNGTDFATPVGTSVYATGDGVVVRALHHPLAGNYIIIKHGRE
CCCCCHHHCCCCCEEECCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCHH
YMTRYLHLSKILVKKGQKVSMGDKIALSGNTGRSTGPHLHYELIKNGRAVNAMKVPLPQA
HHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCCCCCEEHHHHHCCCEEEEEECCCCCC
SPVKSDERARFKQQAKLTIEALQEQV
CCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]