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The map label for this gene is rfaH [H]

Identifier: 59711410

GI number: 59711410

Start: 880586

End: 881080

Strand: Direct

Name: rfaH [H]

Synonym: VF_0803

Alternate gene names: 59711410

Gene position: 880586-881080 (Clockwise)

Preceding gene: 59711408

Following gene: 59711415

Centisome position: 30.39

GC content: 33.94

Gene sequence:

>495_bases
ATGAAACAGTGGTATTTACTTTATTGCAAACGCGGTGAGCAAGAGAGAGCAAAACTACATTTAGAAAATCAAATGGTAGA
GTGCTTTTATCCTGAGATCGTTGTAGAGAAAATTGTTCGAGGAAAAAGAAAACAAGTAAAAGAACCACTATTTCCATGCT
ATATGTTTATCTATTTTGATTTTGAGGTAGGTCCATCGTTTACTTCTATTCGCTCTACTCGTGGAGTTAGTGATTTTATT
CGATTTGGTGCTCAGCCAAAGGTTCTGCAAGGTGACTTGATTTACTCATTAAAAGCGCTCGATGAAAATAATAATAAAGA
GAAATTAGAGTGTTTACCTGAAGCTGGACAAAAAGTAGCGATAAAAGAAGGACCGTATAGCGGTATTGAAGCGATTTATA
AAGAAGCTGATGGTGAAAAACGTTCCATCCTCTTAATAACGTTAATTAATAAAAAAGTAGAAATTAAAATACCTAACTCA
GATATCGAATATTGA

Upstream 100 bases:

>100_bases
CATTTGTTGTGCGTGCAACTATTGATTTTTACTAGGAAATCATTTTTTTGAATGATTTGACATGCTATGATCTTTAGTTG
GTTTGGTTAGGTATTGAGTT

Downstream 100 bases:

>100_bases
TGCATAAAAAAAGCGCCTATAAGGCGCTTTTTTATTACATTAAAATGGTGCTAGTGCATTAATCGTATGCTTCGTTATGA
ACGGCTTGAACAGCACGACC

Product: transcriptional activator RfaH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MKQWYLLYCKRGEQERAKLHLENQMVECFYPEIVVEKIVRGKRKQVKEPLFPCYMFIYFDFEVGPSFTSIRSTRGVSDFI
RFGAQPKVLQGDLIYSLKALDENNNKEKLECLPEAGQKVAIKEGPYSGIEAIYKEADGEKRSILLITLINKKVEIKIPNS
DIEY

Sequences:

>Translated_164_residues
MKQWYLLYCKRGEQERAKLHLENQMVECFYPEIVVEKIVRGKRKQVKEPLFPCYMFIYFDFEVGPSFTSIRSTRGVSDFI
RFGAQPKVLQGDLIYSLKALDENNNKEKLECLPEAGQKVAIKEGPYSGIEAIYKEADGEKRSILLITLINKKVEIKIPNS
DIEY
>Mature_164_residues
MKQWYLLYCKRGEQERAKLHLENQMVECFYPEIVVEKIVRGKRKQVKEPLFPCYMFIYFDFEVGPSFTSIRSTRGVSDFI
RFGAQPKVLQGDLIYSLKALDENNNKEKLECLPEAGQKVAIKEGPYSGIEAIYKEADGEKRSILLITLINKKVEIKIPNS
DIEY

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=161, Percent_Identity=48.4472049689441, Blast_Score=159, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 19064; Mature: 19064

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQWYLLYCKRGEQERAKLHLENQMVECFYPEIVVEKIVRGKRKQVKEPLFPCYMFIYFD
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEEEE
FEVGPSFTSIRSTRGVSDFIRFGAQPKVLQGDLIYSLKALDENNNKEKLECLPEAGQKVA
EECCCCHHHHHHCCCHHHHHHCCCCCCEECCHHEEEEEECCCCCCHHHHHHHHCCCCEEE
IKEGPYSGIEAIYKEADGEKRSILLITLINKKVEIKIPNSDIEY
EECCCCHHHHHHHHHCCCCCCEEEEEEEECCEEEEEECCCCCCC
>Mature Secondary Structure
MKQWYLLYCKRGEQERAKLHLENQMVECFYPEIVVEKIVRGKRKQVKEPLFPCYMFIYFD
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEEEE
FEVGPSFTSIRSTRGVSDFIRFGAQPKVLQGDLIYSLKALDENNNKEKLECLPEAGQKVA
EECCCCHHHHHHCCCHHHHHHCCCCCCEECCHHEEEEEECCCCCCHHHHHHHHCCCCEEE
IKEGPYSGIEAIYKEADGEKRSILLITLINKKVEIKIPNSDIEY
EECCCCHHHHHHHHHCCCCCCEEEEEEEECCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]