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The map label for this gene is nusB [H]

Identifier: 59711311

GI number: 59711311

Start: 771693

End: 772160

Strand: Direct

Name: nusB [H]

Synonym: VF_0704

Alternate gene names: 59711311

Gene position: 771693-772160 (Clockwise)

Preceding gene: 59711310

Following gene: 59711312

Centisome position: 26.63

GC content: 39.53

Gene sequence:

>468_bases
ATGGGGGTTAGTGTGAAACCAGCCGCACGTCGTAATGCACGTCAATTTGCTCTTCAAGCAATCTATTCATGGCAACTAAG
CAAAGAAAATGTTGCAGATATCGAAGAGCAGTTTTTAACTGCTGAAAAATATGATGAAGAAGAGCATCATGCAAATGAGC
CTAAGCTACAAACTCCAGAGACAGATGTAGCGTATTTCCGCGATCTTTTCTCAGGCGTAGCTCTAAATCATATGAAATTA
GATGGGAAAATGCGCCCATACTTATCTCGTCCGCTTCAAGATCTTGACCAAATGGAACTTGCGTTACTACGTATGTCTAT
TTACGAGATGATGAATCGTGATGATGTACCATACAAAGTTGTTATCAATGAAGCGATTGAACTTGCAAAAGTATTCGCAG
CAGAAGATAGCCACAAGTTTGTAAATGGTGTATTAGATAAAGCGGCTCCAACTTTACGTAAAAAGTAA

Upstream 100 bases:

>100_bases
AAGCAATCGAGCGCGCCGGTACCAAGGCTGGTAATAAAGGGGCAGAGGCTGCACTAAGCGCACTCGAAATGATTAATGTT
CTGTCTCAAATCGAATCCTA

Downstream 100 bases:

>100_bases
GTTGGTCGTAGCATACTAATTAAATCGTAAAGGTCAGCCTCGTTGCTGGCCTTTTTTATAACTAAAAAACAGTATTAATC
GAATATGTGTAGTGAATTTA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MGVSVKPAARRNARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPETDVAYFRDLFSGVALNHMKL
DGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK

Sequences:

>Translated_155_residues
MGVSVKPAARRNARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPETDVAYFRDLFSGVALNHMKL
DGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK
>Mature_154_residues
GVSVKPAARRNARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPETDVAYFRDLFSGVALNHMKLD
GKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=149, Percent_Identity=57.7181208053691, Blast_Score=160, Evalue=3e-41,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 17844; Mature: 17712

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVSVKPAARRNARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPE
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC
TDVAYFRDLFSGVALNHMKLDGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKV
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GVSVKPAARRNARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPE
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC
TDVAYFRDLFSGVALNHMKLDGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKV
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VINEAIELAKVFAAEDSHKFVNGVLDKAAPTLRKK
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA