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The map label for this gene is tadA1 [C]

Identifier: 59711123

GI number: 59711123

Start: 552116

End: 553405

Strand: Direct

Name: tadA1 [C]

Synonym: VF_0516

Alternate gene names: 59711123

Gene position: 552116-553405 (Clockwise)

Preceding gene: 59711122

Following gene: 59711124

Centisome position: 19.05

GC content: 39.07

Gene sequence:

>1290_bases
ATGAACAATAATAAAGCGCTGTATATTCAATTAAGAACTCAAATATTTAATGCGTTAGAGCCTGAAGCGTTAAATAAGTT
AACCAAACAAGAGCTGACTCAACAACTATCGAATGCGGTAGATCTACTTATCGATAGAGAGCAATTACCCGTCTCTCTTA
TTATGAAAAATGAGTACGTAGAAAGCCTAGTCAATGAACTTGTTGGCTTAGGACCATTACAAAATTTAATGGATGATGAA
ACTATTACTGACATCATGATTAATGGTCATGAAAATGTATTTATTGAGCGAGATGGTTTAGTCGAGAAAGTCAGTGTTAA
TTTTATTGATGAGCAACAACTGATTGATATTGCAAAACGCATTGCGAGTCGTGTTGGCCGTCGAGTTGATGAATCAAGTC
CGACTTGTGATGCACGCTTAGAAGATGGGAGTCGTGTCAATATAGTGATCCCACCAATTGCTATTGATGGAACTTCAATT
TCTATTCGTAAGTTTAAAAAGCAGAGTATTGCCTTTTCTGACTTAGTTGAATTTGGTGCCATGAGCAAAGAAATGGCGCA
AATACTGATGGTTGCTTCACGCTGTCGTTTGAATATTTTAATTTCAGGCGGTACGGGGTCGGGTAAAACAACCATGCTAA
ATGCGTTATCTCAGTTCATTTCTGAAGGCGAACGTATTGTCACAATTGAAGATGCGGCAGAATTAAAACTACAGCAGCCT
CACGTTGTTCGTTTAGAAACCCGAACATCAGGTATTGAAGGAACAGGTGTCGTCTCTCAACGTGATTTAGTGATTAACTC
ATTACGTATGCGTCCTGATCGAATTATTGTGGGTGAATGTCGTGGTGGAGAGGCGTTTGAAATGCTTCAAGCGATGAATA
CGGGCCATGATGGATCAATGTCTACATTGCATGCCAATTCACCAAGAGATGCATTATCACGAGTTGAAGCCATGGTGATG
ATGGCAACGAATAACTTACCCTTAGAAGCGGTAAGAAGAACCATTGTCAGTGCTGTCGATATCGTTATTCAAATTAGTCG
CTTACACGATGGAACTCGAAAAGTGATGAGCATTTCTGAAGTGGTGGGACTGGAAGGAAATAACGTTGTTCTTGAAGAAA
TATTCGCTTTTAAACCAAATAAAGAACAAAACGAAGATGGAAAAGTAAAAGGTAACTATTTTACTTCCGGCTTAATGCAA
CGCTCTGTGTTGATGGAAAAAGCACGATTCTTTGGTATGGAAGAAAAAATACAATCAGCATTTAGAGCCCCTTACGCAGA
GGTACAGTAA

Upstream 100 bases:

>100_bases
ACTGCCTCTTATGAATTTAGTTGCTTTGATTTTAGGTGAAGAACCAAAGCAAGAAAGCCGTTCATTTTTGAGTTTCTTTA
AAAAGAAAGGGTAGTAAAAA

Downstream 100 bases:

>100_bases
TGTCTTGGATTGCAATCGGTATTGGCTTAATTTTATTGGGCTTTGCTTTTGGTGATAAGCCGGTAAAAAAGAGTCAATAT
TTAGAAAAACTAAATGTGAC

Product: putative type IV secretion NTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MNNNKALYIQLRTQIFNALEPEALNKLTKQELTQQLSNAVDLLIDREQLPVSLIMKNEYVESLVNELVGLGPLQNLMDDE
TITDIMINGHENVFIERDGLVEKVSVNFIDEQQLIDIAKRIASRVGRRVDESSPTCDARLEDGSRVNIVIPPIAIDGTSI
SIRKFKKQSIAFSDLVEFGAMSKEMAQILMVASRCRLNILISGGTGSGKTTMLNALSQFISEGERIVTIEDAAELKLQQP
HVVRLETRTSGIEGTGVVSQRDLVINSLRMRPDRIIVGECRGGEAFEMLQAMNTGHDGSMSTLHANSPRDALSRVEAMVM
MATNNLPLEAVRRTIVSAVDIVIQISRLHDGTRKVMSISEVVGLEGNNVVLEEIFAFKPNKEQNEDGKVKGNYFTSGLMQ
RSVLMEKARFFGMEEKIQSAFRAPYAEVQ

Sequences:

>Translated_429_residues
MNNNKALYIQLRTQIFNALEPEALNKLTKQELTQQLSNAVDLLIDREQLPVSLIMKNEYVESLVNELVGLGPLQNLMDDE
TITDIMINGHENVFIERDGLVEKVSVNFIDEQQLIDIAKRIASRVGRRVDESSPTCDARLEDGSRVNIVIPPIAIDGTSI
SIRKFKKQSIAFSDLVEFGAMSKEMAQILMVASRCRLNILISGGTGSGKTTMLNALSQFISEGERIVTIEDAAELKLQQP
HVVRLETRTSGIEGTGVVSQRDLVINSLRMRPDRIIVGECRGGEAFEMLQAMNTGHDGSMSTLHANSPRDALSRVEAMVM
MATNNLPLEAVRRTIVSAVDIVIQISRLHDGTRKVMSISEVVGLEGNNVVLEEIFAFKPNKEQNEDGKVKGNYFTSGLMQ
RSVLMEKARFFGMEEKIQSAFRAPYAEVQ
>Mature_429_residues
MNNNKALYIQLRTQIFNALEPEALNKLTKQELTQQLSNAVDLLIDREQLPVSLIMKNEYVESLVNELVGLGPLQNLMDDE
TITDIMINGHENVFIERDGLVEKVSVNFIDEQQLIDIAKRIASRVGRRVDESSPTCDARLEDGSRVNIVIPPIAIDGTSI
SIRKFKKQSIAFSDLVEFGAMSKEMAQILMVASRCRLNILISGGTGSGKTTMLNALSQFISEGERIVTIEDAAELKLQQP
HVVRLETRTSGIEGTGVVSQRDLVINSLRMRPDRIIVGECRGGEAFEMLQAMNTGHDGSMSTLHANSPRDALSRVEAMVM
MATNNLPLEAVRRTIVSAVDIVIQISRLHDGTRKVMSISEVVGLEGNNVVLEEIFAFKPNKEQNEDGKVKGNYFTSGLMQ
RSVLMEKARFFGMEEKIQSAFRAPYAEVQ

Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=316, Percent_Identity=28.7974683544304, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 47653; Mature: 47653

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNKALYIQLRTQIFNALEPEALNKLTKQELTQQLSNAVDLLIDREQLPVSLIMKNEYV
CCCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHH
ESLVNELVGLGPLQNLMDDETITDIMINGHENVFIERDGLVEKVSVNFIDEQQLIDIAKR
HHHHHHHHCCCHHHHHCCCCCCCEEEEECCCEEEEECCCCEEEEEEEECCHHHHHHHHHH
IASRVGRRVDESSPTCDARLEDGSRVNIVIPPIAIDGTSISIRKFKKQSIAFSDLVEFGA
HHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCEEHHHHHHHHHHHHHHHHHHCC
MSKEMAQILMVASRCRLNILISGGTGSGKTTMLNALSQFISEGERIVTIEDAAELKLQQP
CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHCEECCC
HVVRLETRTSGIEGTGVVSQRDLVINSLRMRPDRIIVGECRGGEAFEMLQAMNTGHDGSM
CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCC
STLHANSPRDALSRVEAMVMMATNNLPLEAVRRTIVSAVDIVIQISRLHDGTRKVMSISE
CEEECCCCHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VVGLEGNNVVLEEIFAFKPNKEQNEDGKVKGNYFTSGLMQRSVLMEKARFFGMEEKIQSA
HHCCCCCCCHHHHHHHCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FRAPYAEVQ
HCCCCCCCC
>Mature Secondary Structure
MNNNKALYIQLRTQIFNALEPEALNKLTKQELTQQLSNAVDLLIDREQLPVSLIMKNEYV
CCCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHH
ESLVNELVGLGPLQNLMDDETITDIMINGHENVFIERDGLVEKVSVNFIDEQQLIDIAKR
HHHHHHHHCCCHHHHHCCCCCCCEEEEECCCEEEEECCCCEEEEEEEECCHHHHHHHHHH
IASRVGRRVDESSPTCDARLEDGSRVNIVIPPIAIDGTSISIRKFKKQSIAFSDLVEFGA
HHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCEEHHHHHHHHHHHHHHHHHHCC
MSKEMAQILMVASRCRLNILISGGTGSGKTTMLNALSQFISEGERIVTIEDAAELKLQQP
CHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHCEECCC
HVVRLETRTSGIEGTGVVSQRDLVINSLRMRPDRIIVGECRGGEAFEMLQAMNTGHDGSM
CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCC
STLHANSPRDALSRVEAMVMMATNNLPLEAVRRTIVSAVDIVIQISRLHDGTRKVMSISE
CEEECCCCHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VVGLEGNNVVLEEIFAFKPNKEQNEDGKVKGNYFTSGLMQRSVLMEKARFFGMEEKIQSA
HHCCCCCCCHHHHHHHCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
FRAPYAEVQ
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]