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The map label for this gene is gspD [C]

Identifier: 59711120

GI number: 59711120

Start: 549044

End: 550354

Strand: Direct

Name: gspD [C]

Synonym: VF_0513

Alternate gene names: 59711120

Gene position: 549044-550354 (Clockwise)

Preceding gene: 59711119

Following gene: 59711121

Centisome position: 18.95

GC content: 39.44

Gene sequence:

>1311_bases
ATGCGATATCGAATTCTTATTATATTAACGGTTTTACTCAGTATTGTTTCTTTGAACGTGAGAGCAAAAGAGATTGAAAA
CCTATCCGCGGGTGATGCAAAAAGCATAACAACCACGACTGAGATAGGGTCTGTATTTATCTCAAATCCAAAAGTAGCAG
ACTACAAAATTATAGATAAATACAAAGTAGTTTTATTTGGCCGAGAAGTGGGTGACTCCGTTTTTATTGCTTTTGATGTT
CAGGGGCGAGAGCTGTTAAATAAAAAAATAATTGTGAGTAAAAATTACTCAGGTATTGAACAACAAGTTAAGTTGCGATT
TCCCACTTCCGATATCGATATTTTTGCTATTGGTACTAATGCGGTGGTGAGTGGTACCGTATTAAATGAAGAAGATCGTG
ATCAAATTTATGAAATGGTTGCGACTCTATTGTTTGATGATAACGCTGATAACAACGCACAAGATGACCGGACTGAATTA
ACTTACATGGATAAGTTGAATTTTGAAGGTGTGGTTAACCAAATTGAAGTGGCGAGAACCAAACAGGTCAATGTGAAGCT
CACTATCGCAGAAGTTTCTCACTCTTTTATGCAGGATTTTGGCATTAAGGTAGGAAGTAATGGTCAAGCTGGGATCTTTG
TCGATCAACTTGTTCATTTTAGTGCAAGTGACATTGTTTCTGTGATTACCGCTGTAGGGACAGACTCGGTAGGACAAGTA
CTAGCGGAACCGAACTTATCTGTGATTTCCGGTGAGGATGCCAGCTTTCTTGTTGGTGGGGAGCTACCTGTTGTCACCGT
GATTGATGGAGCAACCAACGTTCAATATAAAGAATTTGGTGTAAAGCTAGATCTAACGGCTAAGGTTGAGAGAGACGATA
AAATTAAATTGGCATTAGCGCCAAGTGTAAGTTCTCTTGATACGCAATACGCTAATGATAATTACAACTTACCATCATTA
AAAACGCGTAGTGCAAGAACAACAGTCGAGCTCGGAGACGGACAAAGTTTTGTGCTAGGTGGTTTGCTTAATAGTGAAGA
GAAAGAGTCGTTAACTCGTATTCCTTTTGTTGGTGATATCCCTATTTTAGGGGCTTTGTTTCGTCATACAGGTACGGAGC
GAAATAAAACTGAGCTGATTATTGTTGCAACGGTAAACCTTGTTCAACCGGTTAAAGCAAATCAAATCCAGCTTCCAACC
ATGCAGAAAACCAGTACGTTAAGACGTTTTCTCGGTATGGGAAGTGACTATGAAAGAGCAGAAGACCAATGGGCAAGTGA
AGTTCTGAATGCGGGTGGATTTAGAAAATGA

Upstream 100 bases:

>100_bases
TTCTCACGAACTTCATGCAGATTCAAGTGATGTTATTACTATCCCTGGATTTAAAAAAGTAAAACCAGTCAACTCTATTC
AAGAGTTTAGAGGCTAAAAA

Downstream 100 bases:

>100_bases
AAAAACTATATGTAATAGCTGTGCTTTTATTTTTATCGGGTTGTGCTGACCATATTAATGAAAAGCAGGGGACTCATATT
AATGTTATTCCTGTGACGTA

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MRYRILIILTVLLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVGDSVFIAFDV
QGRELLNKKIIVSKNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEEDRDQIYEMVATLLFDDNADNNAQDDRTEL
TYMDKLNFEGVVNQIEVARTKQVNVKLTIAEVSHSFMQDFGIKVGSNGQAGIFVDQLVHFSASDIVSVITAVGTDSVGQV
LAEPNLSVISGEDASFLVGGELPVVTVIDGATNVQYKEFGVKLDLTAKVERDDKIKLALAPSVSSLDTQYANDNYNLPSL
KTRSARTTVELGDGQSFVLGGLLNSEEKESLTRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT
MQKTSTLRRFLGMGSDYERAEDQWASEVLNAGGFRK

Sequences:

>Translated_436_residues
MRYRILIILTVLLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVGDSVFIAFDV
QGRELLNKKIIVSKNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEEDRDQIYEMVATLLFDDNADNNAQDDRTEL
TYMDKLNFEGVVNQIEVARTKQVNVKLTIAEVSHSFMQDFGIKVGSNGQAGIFVDQLVHFSASDIVSVITAVGTDSVGQV
LAEPNLSVISGEDASFLVGGELPVVTVIDGATNVQYKEFGVKLDLTAKVERDDKIKLALAPSVSSLDTQYANDNYNLPSL
KTRSARTTVELGDGQSFVLGGLLNSEEKESLTRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT
MQKTSTLRRFLGMGSDYERAEDQWASEVLNAGGFRK
>Mature_436_residues
MRYRILIILTVLLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVGDSVFIAFDV
QGRELLNKKIIVSKNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEEDRDQIYEMVATLLFDDNADNNAQDDRTEL
TYMDKLNFEGVVNQIEVARTKQVNVKLTIAEVSHSFMQDFGIKVGSNGQAGIFVDQLVHFSASDIVSVITAVGTDSVGQV
LAEPNLSVISGEDASFLVGGELPVVTVIDGATNVQYKEFGVKLDLTAKVERDDKIKLALAPSVSSLDTQYANDNYNLPSL
KTRSARTTVELGDGQSFVLGGLLNSEEKESLTRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT
MQKTSTLRRFLGMGSDYERAEDQWASEVLNAGGFRK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=168, Percent_Identity=34.5238095238095, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1789793, Length=151, Percent_Identity=30.4635761589404, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 47769; Mature: 47769

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYRILIILTVLLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDK
CCEEEEHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEHHHCEEEECCCCCCCEEEECE
YKVVLFGREVGDSVFIAFDVQGRELLNKKIIVSKNYSGIEQQVKLRFPTSDIDIFAIGTN
EEEEEEEEECCCEEEEEEECCCHHHCCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCC
AVVSGTVLNEEDRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVART
CEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHEEEE
KQVNVKLTIAEVSHSFMQDFGIKVGSNGQAGIFVDQLVHFSASDIVSVITAVGTDSVGQV
EEEEEEEEHHHHHHHHHHHHCEEECCCCCCCEEHHHHHHCCHHHHHHHHHHHCCCHHHHH
LAEPNLSVISGEDASFLVGGELPVVTVIDGATNVQYKEFGVKLDLTAKVERDDKIKLALA
HCCCCCEEEECCCCCEEECCCCCEEEEECCCCCCEEHHHCEEEEEEEEECCCCEEEEEEC
PSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESLTRIPFVGDI
CCCHHCCHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHCCCCCCCH
PILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPTMQKTSTLRRFLGMGSDYERA
HHHHHHHHHCCCCCCCEEEEEEEEECEECCCCCCEEECCCCHHHHHHHHHHCCCCCHHHH
EDQWASEVLNAGGFRK
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRYRILIILTVLLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDK
CCEEEEHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEHHHCEEEECCCCCCCEEEECE
YKVVLFGREVGDSVFIAFDVQGRELLNKKIIVSKNYSGIEQQVKLRFPTSDIDIFAIGTN
EEEEEEEEECCCEEEEEEECCCHHHCCCEEEEECCCCCCCEEEEEECCCCCEEEEEECCC
AVVSGTVLNEEDRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVART
CEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHEEEE
KQVNVKLTIAEVSHSFMQDFGIKVGSNGQAGIFVDQLVHFSASDIVSVITAVGTDSVGQV
EEEEEEEEHHHHHHHHHHHHCEEECCCCCCCEEHHHHHHCCHHHHHHHHHHHCCCHHHHH
LAEPNLSVISGEDASFLVGGELPVVTVIDGATNVQYKEFGVKLDLTAKVERDDKIKLALA
HCCCCCEEEECCCCCEEECCCCCEEEEECCCCCCEEHHHCEEEEEEEEECCCCEEEEEEC
PSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESLTRIPFVGDI
CCCHHCCHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHCCCCCCCH
PILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPTMQKTSTLRRFLGMGSDYERA
HHHHHHHHHCCCCCCCEEEEEEEEECEECCCCCCEEECCCCHHHHHHHHHHCCCCCHHHH
EDQWASEVLNAGGFRK
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]