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The map label for this gene is yrbA [H]

Identifier: 59711007

GI number: 59711007

Start: 430114

End: 430371

Strand: Direct

Name: yrbA [H]

Synonym: VF_0400

Alternate gene names: 59711007

Gene position: 430114-430371 (Clockwise)

Preceding gene: 59711006

Following gene: 59711008

Centisome position: 14.84

GC content: 39.53

Gene sequence:

>258_bases
ATGGATAGCGCCGAGATTAAAGAGTTACTAGACGCAGCACTTCAACTAGAAGAGATACACGTAAAAGGCGAAGGAAGCCA
TTTCGAAGTCATTGCTGTTGATGCATCATTCGCAGGTATGAGCCGAGTGAAAAAACAACAAACCATCTATGGACCTTTGA
TGGAGCATATCTCAACGAATACAATTCATGCTCTATCAATAAAAGCGTTTACTCCTGAAGAGTGGGCACGTGATAAAAAA
TTAAATAGCTTATTCTAA

Upstream 100 bases:

>100_bases
TAATGTTTACTTTCGTCCCAGATCAGCTCATTACTTTAATTCAATTAAGTAATGTGGAATCATTGTTTGCTGATCATATA
AATAACGCAAAGGTAGAGTA

Downstream 100 bases:

>100_bases
GAGGCCCTTTGATGTATAAGTTTCGAATTCAAGGAAGTGATAAACCACTTTCTGGCGAAGTTACAATTTCTGGTGCAAAA
AATGCTGCACTACCAATTCT

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MDSAEIKELLDAALQLEEIHVKGEGSHFEVIAVDASFAGMSRVKKQQTIYGPLMEHISTNTIHALSIKAFTPEEWARDKK
LNSLF

Sequences:

>Translated_85_residues
MDSAEIKELLDAALQLEEIHVKGEGSHFEVIAVDASFAGMSRVKKQQTIYGPLMEHISTNTIHALSIKAFTPEEWARDKK
LNSLF
>Mature_85_residues
MDSAEIKELLDAALQLEEIHVKGEGSHFEVIAVDASFAGMSRVKKQQTIYGPLMEHISTNTIHALSIKAFTPEEWARDKK
LNSLF

Specific function: Unknown

COG id: COG5007

COG function: function code K; Predicted transcriptional regulator, BolA superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bolA/yrbA family [H]

Homologues:

Organism=Escherichia coli, GI87082226, Length=84, Percent_Identity=65.4761904761905, Blast_Score=122, Evalue=3e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002634 [H]

Pfam domain/function: PF01722 BolA [H]

EC number: NA

Molecular weight: Translated: 9513; Mature: 9513

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSAEIKELLDAALQLEEIHVKGEGSHFEVIAVDASFAGMSRVKKQQTIYGPLMEHISTN
CCHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
TIHALSIKAFTPEEWARDKKLNSLF
CEEEEEEEEECCHHHHHHHHHCCCC
>Mature Secondary Structure
MDSAEIKELLDAALQLEEIHVKGEGSHFEVIAVDASFAGMSRVKKQQTIYGPLMEHISTN
CCHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
TIHALSIKAFTPEEWARDKKLNSLF
CEEEEEEEEECCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]