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The map label for this gene is ytfB [H]

Identifier: 59710922

GI number: 59710922

Start: 324394

End: 325044

Strand: Direct

Name: ytfB [H]

Synonym: VF_0315

Alternate gene names: 59710922

Gene position: 324394-325044 (Clockwise)

Preceding gene: 59710919

Following gene: 59710927

Centisome position: 11.2

GC content: 36.56

Gene sequence:

>651_bases
ATGAATAAAAAGAAAAAAATGAATGTAAAGCGCCCAGATTTTTCTGAGCAATTGGCTAATTTAAAGGAAAAGTGTGGGCC
TCTTATTGAAAAAGTTGCACCTTATTGGCAGCGATTACCTCAATTTCACCAAAAAGCATTACGCATTTTAGTTCCTGTTA
CCTTTGTTTTAATTTTATTACCAAGTGGTGCAGAGGAAGAAGTAGATAGTATTCAGCCTACCGTGATCCCTGCGCCTGAA
ATGCAGAGACAAAGTGTCAGCCTAAACCTTGAAGGGCTAAGTGAACAAGAGGCATCATCAAACCGTAATCAAAGAGAAAC
GAGAGTCAATAGAGAAGAAAAAGTACCAACTCAAACAGCCTCTATTGAAAAAGAAACAACGGCTGTTGAAGCCAAATGGC
ACGATTATCAAATTCAAGAAGGTGATACCCTTTATCAGGTATTTAGAAAAAATAATCTGCCATTAACTGAATTAAATAAA
GTGGTGAAAATTGAAGGTGCAGATAAACCATTAAGTAATATTAAGAAAGGTCAACTGTTTCGCTTTAAACTCAATCGACA
AGGCGATCTAGATATCGTACAAATAGAACGTGATGGTCAAGCGATCATGTACTTTAGAATGTCCGATGGTAATTTTGGAC
GCAGTAAATAA

Upstream 100 bases:

>100_bases
AAGGATACAGAGATCTAAGCTTAAGGTAAACTTTTGTACTTCTTTGAACTCTGATATTAGAATAAAACGTGAGCTCACCA
GTTTCGCATGAGGCGATGGT

Downstream 100 bases:

>100_bases
TCTCTCTTTTTACTATCTTCCTCTTATGTTCTTTAATCACGTTTTAGGCATAAGAGGAATGACAATCAATGCAATCCCCA
CTGCTGTTAATATGTCTGGG

Product: opacity associated protein OapA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNKKKKMNVKRPDFSEQLANLKEKCGPLIEKVAPYWQRLPQFHQKALRILVPVTFVLILLPSGAEEEVDSIQPTVIPAPE
MQRQSVSLNLEGLSEQEASSNRNQRETRVNREEKVPTQTASIEKETTAVEAKWHDYQIQEGDTLYQVFRKNNLPLTELNK
VVKIEGADKPLSNIKKGQLFRFKLNRQGDLDIVQIERDGQAIMYFRMSDGNFGRSK

Sequences:

>Translated_216_residues
MNKKKKMNVKRPDFSEQLANLKEKCGPLIEKVAPYWQRLPQFHQKALRILVPVTFVLILLPSGAEEEVDSIQPTVIPAPE
MQRQSVSLNLEGLSEQEASSNRNQRETRVNREEKVPTQTASIEKETTAVEAKWHDYQIQEGDTLYQVFRKNNLPLTELNK
VVKIEGADKPLSNIKKGQLFRFKLNRQGDLDIVQIERDGQAIMYFRMSDGNFGRSK
>Mature_216_residues
MNKKKKMNVKRPDFSEQLANLKEKCGPLIEKVAPYWQRLPQFHQKALRILVPVTFVLILLPSGAEEEVDSIQPTVIPAPE
MQRQSVSLNLEGLSEQEASSNRNQRETRVNREEKVPTQTASIEKETTAVEAKWHDYQIQEGDTLYQVFRKNNLPLTELNK
VVKIEGADKPLSNIKKGQLFRFKLNRQGDLDIVQIERDGQAIMYFRMSDGNFGRSK

Specific function: Unknown

COG id: COG3061

COG function: function code M; Cell envelope opacity-associated protein A

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082389, Length=206, Percent_Identity=28.1553398058252, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013731
- InterPro:   IPR007340 [H]

Pfam domain/function: PF04225 OapA; PF08525 OapA_N [H]

EC number: NA

Molecular weight: Translated: 24865; Mature: 24865

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKKKMNVKRPDFSEQLANLKEKCGPLIEKVAPYWQRLPQFHQKALRILVPVTFVLILL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PSGAEEEVDSIQPTVIPAPEMQRQSVSLNLEGLSEQEASSNRNQRETRVNREEKVPTQTA
CCCCHHHHHCCCCCEECCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHCCHHHCCCCHHH
SIEKETTAVEAKWHDYQIQEGDTLYQVFRKNNLPLTELNKVVKIEGADKPLSNIKKGQLF
CCCHHHHEEEEECCCEEECCCHHHHHHHHCCCCCHHHHCCEEEECCCCCCHHHCCCCCEE
RFKLNRQGDLDIVQIERDGQAIMYFRMSDGNFGRSK
EEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MNKKKKMNVKRPDFSEQLANLKEKCGPLIEKVAPYWQRLPQFHQKALRILVPVTFVLILL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PSGAEEEVDSIQPTVIPAPEMQRQSVSLNLEGLSEQEASSNRNQRETRVNREEKVPTQTA
CCCCHHHHHCCCCCEECCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHCCHHHCCCCHHH
SIEKETTAVEAKWHDYQIQEGDTLYQVFRKNNLPLTELNKVVKIEGADKPLSNIKKGQLF
CCCHHHHEEEEECCCEEECCCHHHHHHHHCCCCCHHHHCCEEEECCCCCCHHHCCCCCEE
RFKLNRQGDLDIVQIERDGQAIMYFRMSDGNFGRSK
EEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]