Click here to switch to the map view.

The map label for this gene is yhgF [H]

Identifier: 59710727

GI number: 59710727

Start: 138384

End: 140699

Strand: Reverse

Name: yhgF [H]

Synonym: VF_0120

Alternate gene names: 59710727

Gene position: 140699-138384 (Counterclockwise)

Preceding gene: 59710728

Following gene: 59710724

Centisome position: 4.86

GC content: 43.35

Gene sequence:

>2316_bases
ATGATAATAAACATAATTGCTAAAGAACTTAACGTTCGCCCTCAACAAGTTTCTGCTGCCGTTCAACTAATTGACGAAGG
TAGCACCATCCCATTTATTGCTCGTTACCGTAAAGAGGTAACAGATGGCCTAGACGATACGCAACTTCGTACGCTTGATA
CTCGTTTAACTTACTTACGTGAGTTGGATGACCGCCGTCAGTCGATCTTAAAATCGATTAAAGAACAAGACAAACTGACG
CCTGAATTAGAGCGTGAGATTTTAGATGCGGACAGCAAAACACGTCTTGAAGACCTGTATCTACCATTTAAACGTAAGCG
TCGTACTAAAGGCCAAATCGCCATTGAAGCAGGTATTGAACCATTAGCTGATTTACTGTGGACACAGCCTGAAAATACAC
CTGAAGATGCCGCTCAATCTTACATTGATGAAGAAAAAGGCTTTGCAGATACTAAGGCAGTATTAGACGGTGCTCGTGCC
ATTCTTATGGAACGCATGGCAGAAGATGCAAACTTACTTGAAAAAGTACGTACTTATCTAACGGCTAATGCTGAGCTTGT
ATCTAAAATGGTAGACGGCCAAGAGCAAGCGGGTGAAAAGTTCAAAGATTACTTTGATCACCATGAAGCATTAACCAAAG
TCCCTTCTCACCGTGCTCTTGCTATGCTACGTGGTCGTAATGAAGGCTTCTTACAGCTTTCTATTAACGCTGACCCAACT
CAAGAAGAAGGTGCTCGTGGCTCGTACTGTGAAATCATCATCGCCAATCATTATGGCATTACGCTAGGTTCTCAACCTGC
TGATTTATGGCGTAAACAAGTGATCAGCTGGACATGGCGTATTAAGATTTTAATGCACATGGAAACGGAATTAATGGGTG
GTCTAAAAGAACGCTCAGAAAACGAAGCGATTGATGTATTTGCTACTAACCTTAAAGACCTATTAATGGCAGCTCCAGCA
GGTCTTAAAACGACACTTGGACTTGATCCAGGCCTACGTACAGGTACGAAAGTCGCCGTGGTTGATGCTACTGGTAAAGT
ACTAGCAACAGATACGATTTACCCTAACCAACCCCATAATCAAATTGCAAAATCAGCACAGATTATCGAAGCATTAATCA
AACAACACAATGTAGATTTAATCGCCATTGGTAACGGTACTGCTTCACGTGAGACCGATGCCTTTGTGGGTAATCTACTA
AAAGATGCTGGCCTATCAACGGCGAAAATCATCGTAAGTGAAGCGGGTGCATCGGTATATTCTGCTTCTGAATTAGCAGC
GAAAGAGTTCCCTGATTTAGATGTATCCATCCGTGGTGCAGTATCTATCGCTCGTCGTCTGCAAGATCCTCTGGCAGAGC
TAGTAAAAATCGACCCTAAAGCCATTGGTGTTGGTCAATATCAACACGATGTAAGCCAAAGCCAACTAGCGAAAAAATTA
GATGCCGTCATCGAAGACTGTGTAAACGCCGTTGGTGTTGACGTAAATACAGCCTCTCCTGCTCTATTAACTCGTGTTGC
AGGTTTATCAGCAACGATTGCACAAAACATTGTGGATTACCGTGATGAAAACGGTCGCTTTGAAAACCGTACGACACTGA
AAAAAGTCGCTCGTTTAGGGCCTAAAGCCTTTGAACAATGTGCTGGTTTCTTACGTGTAATGAACGGTAAAAACCCATTG
GATGCCTCTGCGGTTCACCCTGAAGCTTACCCAGTAGTAAAAACCATTGCTGAGAAAAATGGCAAAGCTATTGATGCGAT
TATTGGTAATACTGAGTTTTTACGCTCGGTTGCGGCTAACGATTACATCAGTGCAGATTTTGGTTTGCCAACAGTCACTG
ACATCATTAAAGAGCTAGATAAGCCGGGTCGAGATCCTCGTCCTGAGTTTAAAACAGCCACCTTTGCTGATGGCGTAAAT
ACGGTATCTGACCTTGAATTAGGCATGGTATTAGAAGGTGTTGTATCAAACGTAGCCAACTTCGGTGCATTCGTTGATAT
CGGTGTTCACCAAGATGGCTTAGTTCATATTTCTGCATTAAGTGATACGTTTGTTTCTGACCCTAGAGAAGTCGTTAAAG
CCGGTGATATTGTAAAAGTGAAGGTTATGGAAGTAGATGTGCAACGTAAGCGTATCGCTCTTTCTATGCGTTTAAACGAT
AAGCCAGGGGAAGACAATCGCCCTCAACGCCAATCAAATAAACCACAACAGCGCAATGAGCGTTCTCAAGCGCCAAGACA
GCAACGTAATAACGATGTTGGCGGTGGTGCAATGGGTGGTGCGTTTGCGGCTGCTTTTGCGAAGGCGAAGAAGTAA

Upstream 100 bases:

>100_bases
TGCCAGCGAAGCGATCTGAACTCTGCTTCTTTTGAAACCTGAAACCTAATTAAAACAGCCCAATCACACGCTTTAAATAA
ATTAAATAAAAAGAATCAAA

Downstream 100 bases:

>100_bases
GTTTCGAGTGACGAGAACGCTGCGCTTCTAGGGGCGAGTAAGAGCAGAGAAAAAGGTTTTAGGGTTCAGGGCGCTATGCT
TGCAGGTTTCAGGTGTACTC

Product: transcriptional accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 771; Mature: 771

Protein sequence:

>771_residues
MIINIIAKELNVRPQQVSAAVQLIDEGSTIPFIARYRKEVTDGLDDTQLRTLDTRLTYLRELDDRRQSILKSIKEQDKLT
PELEREILDADSKTRLEDLYLPFKRKRRTKGQIAIEAGIEPLADLLWTQPENTPEDAAQSYIDEEKGFADTKAVLDGARA
ILMERMAEDANLLEKVRTYLTANAELVSKMVDGQEQAGEKFKDYFDHHEALTKVPSHRALAMLRGRNEGFLQLSINADPT
QEEGARGSYCEIIIANHYGITLGSQPADLWRKQVISWTWRIKILMHMETELMGGLKERSENEAIDVFATNLKDLLMAAPA
GLKTTLGLDPGLRTGTKVAVVDATGKVLATDTIYPNQPHNQIAKSAQIIEALIKQHNVDLIAIGNGTASRETDAFVGNLL
KDAGLSTAKIIVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVSQSQLAKKL
DAVIEDCVNAVGVDVNTASPALLTRVAGLSATIAQNIVDYRDENGRFENRTTLKKVARLGPKAFEQCAGFLRVMNGKNPL
DASAVHPEAYPVVKTIAEKNGKAIDAIIGNTEFLRSVAANDYISADFGLPTVTDIIKELDKPGRDPRPEFKTATFADGVN
TVSDLELGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLND
KPGEDNRPQRQSNKPQQRNERSQAPRQQRNNDVGGGAMGGAFAAAFAKAKK

Sequences:

>Translated_771_residues
MIINIIAKELNVRPQQVSAAVQLIDEGSTIPFIARYRKEVTDGLDDTQLRTLDTRLTYLRELDDRRQSILKSIKEQDKLT
PELEREILDADSKTRLEDLYLPFKRKRRTKGQIAIEAGIEPLADLLWTQPENTPEDAAQSYIDEEKGFADTKAVLDGARA
ILMERMAEDANLLEKVRTYLTANAELVSKMVDGQEQAGEKFKDYFDHHEALTKVPSHRALAMLRGRNEGFLQLSINADPT
QEEGARGSYCEIIIANHYGITLGSQPADLWRKQVISWTWRIKILMHMETELMGGLKERSENEAIDVFATNLKDLLMAAPA
GLKTTLGLDPGLRTGTKVAVVDATGKVLATDTIYPNQPHNQIAKSAQIIEALIKQHNVDLIAIGNGTASRETDAFVGNLL
KDAGLSTAKIIVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVSQSQLAKKL
DAVIEDCVNAVGVDVNTASPALLTRVAGLSATIAQNIVDYRDENGRFENRTTLKKVARLGPKAFEQCAGFLRVMNGKNPL
DASAVHPEAYPVVKTIAEKNGKAIDAIIGNTEFLRSVAANDYISADFGLPTVTDIIKELDKPGRDPRPEFKTATFADGVN
TVSDLELGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLND
KPGEDNRPQRQSNKPQQRNERSQAPRQQRNNDVGGGAMGGAFAAAFAKAKK
>Mature_771_residues
MIINIIAKELNVRPQQVSAAVQLIDEGSTIPFIARYRKEVTDGLDDTQLRTLDTRLTYLRELDDRRQSILKSIKEQDKLT
PELEREILDADSKTRLEDLYLPFKRKRRTKGQIAIEAGIEPLADLLWTQPENTPEDAAQSYIDEEKGFADTKAVLDGARA
ILMERMAEDANLLEKVRTYLTANAELVSKMVDGQEQAGEKFKDYFDHHEALTKVPSHRALAMLRGRNEGFLQLSINADPT
QEEGARGSYCEIIIANHYGITLGSQPADLWRKQVISWTWRIKILMHMETELMGGLKERSENEAIDVFATNLKDLLMAAPA
GLKTTLGLDPGLRTGTKVAVVDATGKVLATDTIYPNQPHNQIAKSAQIIEALIKQHNVDLIAIGNGTASRETDAFVGNLL
KDAGLSTAKIIVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVSQSQLAKKL
DAVIEDCVNAVGVDVNTASPALLTRVAGLSATIAQNIVDYRDENGRFENRTTLKKVARLGPKAFEQCAGFLRVMNGKNPL
DASAVHPEAYPVVKTIAEKNGKAIDAIIGNTEFLRSVAANDYISADFGLPTVTDIIKELDKPGRDPRPEFKTATFADGVN
TVSDLELGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLND
KPGEDNRPQRQSNKPQQRNERSQAPRQQRNNDVGGGAMGGAFAAAFAKAKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=794, Percent_Identity=32.8715365239295, Blast_Score=391, Evalue=1e-108,
Organism=Homo sapiens, GI27597090, Length=771, Percent_Identity=23.6057068741894, Blast_Score=108, Evalue=2e-23,
Organism=Escherichia coli, GI87082262, Length=746, Percent_Identity=69.4369973190349, Blast_Score=1048, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=84, Percent_Identity=39.2857142857143, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=750, Percent_Identity=27.6, Blast_Score=212, Evalue=7e-55,
Organism=Caenorhabditis elegans, GI17552892, Length=188, Percent_Identity=30.3191489361702, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI62484314, Length=775, Percent_Identity=33.0322580645161, Blast_Score=374, Evalue=1e-103,
Organism=Drosophila melanogaster, GI24640080, Length=187, Percent_Identity=28.8770053475936, Blast_Score=78, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84441; Mature: 84441

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIINIIAKELNVRPQQVSAAVQLIDEGSTIPFIARYRKEVTDGLDDTQLRTLDTRLTYLR
CEEEEEHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ELDDRRQSILKSIKEQDKLTPELEREILDADSKTRLEDLYLPFKRKRRTKGQIAIEAGIE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCHHHHCCCCCCEEEECCCH
PLADLLWTQPENTPEDAAQSYIDEEKGFADTKAVLDGARAILMERMAEDANLLEKVRTYL
HHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TANAELVSKMVDGQEQAGEKFKDYFDHHEALTKVPSHRALAMLRGRNEGFLQLSINADPT
HCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCC
QEEGARGSYCEIIIANHYGITLGSQPADLWRKQVISWTWRIKILMHMETELMGGLKERSE
CCCCCCCCEEEEEEECCCEEEECCCHHHHHHHHHHHHHEEEEEEEEHHHHHHCCHHHCCC
NEAIDVFATNLKDLLMAAPAGLKTTLGLDPGLRTGTKVAVVDATGKVLATDTIYPNQPHN
CCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCHH
QIAKSAQIIEALIKQHNVDLIAIGNGTASRETDAFVGNLLKDAGLSTAKIIVSEAGASVY
HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
SASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVSQSQLAKKL
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHH
DAVIEDCVNAVGVDVNTASPALLTRVAGLSATIAQNIVDYRDENGRFENRTTLKKVARLG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
PKAFEQCAGFLRVMNGKNPLDASAVHPEAYPVVKTIAEKNGKAIDAIIGNTEFLRSVAAN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHC
DYISADFGLPTVTDIIKELDKPGRDPRPEFKTATFADGVNTVSDLELGMVLEGVVSNVAN
CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
FGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLND
CCCEEEECCCCCCCEEEEEHHHHHHCCHHHHHHCCCEEEEEEEEECHHHHEEEEEEEECC
KPGEDNRPQRQSNKPQQRNERSQAPRQQRNNDVGGGAMGGAFAAAFAKAKK
CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MIINIIAKELNVRPQQVSAAVQLIDEGSTIPFIARYRKEVTDGLDDTQLRTLDTRLTYLR
CEEEEEHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ELDDRRQSILKSIKEQDKLTPELEREILDADSKTRLEDLYLPFKRKRRTKGQIAIEAGIE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCHHHHCCCCCCEEEECCCH
PLADLLWTQPENTPEDAAQSYIDEEKGFADTKAVLDGARAILMERMAEDANLLEKVRTYL
HHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TANAELVSKMVDGQEQAGEKFKDYFDHHEALTKVPSHRALAMLRGRNEGFLQLSINADPT
HCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCC
QEEGARGSYCEIIIANHYGITLGSQPADLWRKQVISWTWRIKILMHMETELMGGLKERSE
CCCCCCCCEEEEEEECCCEEEECCCHHHHHHHHHHHHHEEEEEEEEHHHHHHCCHHHCCC
NEAIDVFATNLKDLLMAAPAGLKTTLGLDPGLRTGTKVAVVDATGKVLATDTIYPNQPHN
CCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCHH
QIAKSAQIIEALIKQHNVDLIAIGNGTASRETDAFVGNLLKDAGLSTAKIIVSEAGASVY
HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
SASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVSQSQLAKKL
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHH
DAVIEDCVNAVGVDVNTASPALLTRVAGLSATIAQNIVDYRDENGRFENRTTLKKVARLG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
PKAFEQCAGFLRVMNGKNPLDASAVHPEAYPVVKTIAEKNGKAIDAIIGNTEFLRSVAAN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHC
DYISADFGLPTVTDIIKELDKPGRDPRPEFKTATFADGVNTVSDLELGMVLEGVVSNVAN
CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHH
FGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLND
CCCEEEECCCCCCCEEEEEHHHHHHCCHHHHHHCCCEEEEEEEEECHHHHEEEEEEEECC
KPGEDNRPQRQSNKPQQRNERSQAPRQQRNNDVGGGAMGGAFAAAFAKAKK
CCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]