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The map label for this gene is secB

Identifier: 58617501

GI number: 58617501

Start: 1238512

End: 1239036

Strand: Reverse

Name: secB

Synonym: ERGA_CDS_07740

Alternate gene names: 58617501

Gene position: 1239036-1238512 (Counterclockwise)

Preceding gene: 58617503

Following gene: 58617500

Centisome position: 82.61

GC content: 31.24

Gene sequence:

>525_bases
ATGTCATATAAATTAGACGTTAAAGCACAATATATTAAAGATCTTTCATTTGAGAATCCAAATTCTCCACAAATTTTTGT
GATGATGAGTAAGGCTACACCTGAGATTAATATTTCCGTCAATGTCAGTTCTATAAGTCTTCCTGTTAAGGCAGATGATC
AAAAAAGTGGTACTGAAAATCTGTCTTCTTTGTATGAAGTTACATTGCAAGTTAATGCAGAAGCTCGTATACAAAACACT
GTGGCATTTATTTGTGAAATTAAATATTGTGGTGTATTTTCTATTAAAAGTGATACTGAAAATAATGAAATTGATTTAAG
TCACCAAGAAGTAAAAGATATGTTACTAGTGGCTGCTCCAAGTATTTTATTCCCATTTGTTAGAGAGCTAATTGCTAGGG
CTACTTCTTCAAGTGGATTTCCACCTCTTATGCTTGATATAGTTGATTTTAGAACTATGTATGAGAATCAACTTAAACAA
GGTGTTGGGCAAAACGATAATGATAATTCTGTAGATAATGTTTAA

Upstream 100 bases:

>100_bases
GACAAAAGTGCATACTGTGTATACTTAACTATAATATTATAGCTTAGTGTACGTTAATCAATAATTAATTACATTATTTT
TAGTTTGGAGCTTATGTAGT

Downstream 100 bases:

>100_bases
AGCTGGCTTAGTAAGTCTTATTTATAGAGGATTTTAACTATATGGGTTTTTTGTGTTATGAAGTTTTTTATAATAGGTAA
TCTACTCTGTATTATGATTG

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSYKLDVKAQYIKDLSFENPNSPQIFVMMSKATPEINISVNVSSISLPVKADDQKSGTENLSSLYEVTLQVNAEARIQNT
VAFICEIKYCGVFSIKSDTENNEIDLSHQEVKDMLLVAAPSILFPFVRELIARATSSSGFPPLMLDIVDFRTMYENQLKQ
GVGQNDNDNSVDNV

Sequences:

>Translated_174_residues
MSYKLDVKAQYIKDLSFENPNSPQIFVMMSKATPEINISVNVSSISLPVKADDQKSGTENLSSLYEVTLQVNAEARIQNT
VAFICEIKYCGVFSIKSDTENNEIDLSHQEVKDMLLVAAPSILFPFVRELIARATSSSGFPPLMLDIVDFRTMYENQLKQ
GVGQNDNDNSVDNV
>Mature_173_residues
SYKLDVKAQYIKDLSFENPNSPQIFVMMSKATPEINISVNVSSISLPVKADDQKSGTENLSSLYEVTLQVNAEARIQNTV
AFICEIKYCGVFSIKSDTENNEIDLSHQEVKDMLLVAAPSILFPFVRELIARATSSSGFPPLMLDIVDFRTMYENQLKQG
VGQNDNDNSVDNV

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=159, Percent_Identity=32.0754716981132, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_EHRRG (Q5FG94)

Other databases:

- EMBL:   CR925677
- RefSeq:   YP_196700.1
- ProteinModelPortal:   Q5FG94
- SMR:   Q5FG94
- STRING:   Q5FG94
- GeneID:   3268344
- GenomeReviews:   CR925677_GR
- KEGG:   erg:ERGA_CDS_07740
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   NIDVQAN
- ProtClustDB:   PRK05751
- BioCyc:   ERUM302409:ERGA_CDS_07740-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 19377; Mature: 19246

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKLDVKAQYIKDLSFENPNSPQIFVMMSKATPEINISVNVSSISLPVKADDQKSGTEN
CCEEECCHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEEEEECCCCCCCCHHH
LSSLYEVTLQVNAEARIQNTVAFICEIKYCGVFSIKSDTENNEIDLSHQEVKDMLLVAAP
HHHHEEEEEEECCCHHHHHEEEEEEEEEECCEEEECCCCCCCEEECCHHHHHHHHHHHHH
SILFPFVRELIARATSSSGFPPLMLDIVDFRTMYENQLKQGVGQNDNDNSVDNV
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SYKLDVKAQYIKDLSFENPNSPQIFVMMSKATPEINISVNVSSISLPVKADDQKSGTEN
CEEECCHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEEEEECCCCCCCCHHH
LSSLYEVTLQVNAEARIQNTVAFICEIKYCGVFSIKSDTENNEIDLSHQEVKDMLLVAAP
HHHHEEEEEEECCCHHHHHEEEEEEEEEECCEEEECCCCCCCEEECCHHHHHHHHHHHHH
SILFPFVRELIARATSSSGFPPLMLDIVDFRTMYENQLKQGVGQNDNDNSVDNV
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA