Click here to switch to the map view.

The map label for this gene is rbfA [H]

Identifier: 58617207

GI number: 58617207

Start: 777070

End: 777417

Strand: Reverse

Name: rbfA [H]

Synonym: ERGA_CDS_04800

Alternate gene names: 58617207

Gene position: 777417-777070 (Counterclockwise)

Preceding gene: 58617208

Following gene: 58617205

Centisome position: 51.83

GC content: 25.0

Gene sequence:

>348_bases
ATGATTTATAAATCTGAGAGTTTTAGAAATTTAAAGGTTGCTTCAGTATTAAGCAGAGCAATATCTAGAGTATTGATACA
TGATATTTATTCAATAGGTTGTAGTATAGTTAATGTATCTAAAGTAGAAGTGAGTAAAGACGTCAAAAATGCTACTGTAT
TTGTTGTAATTTCCGATGATCATCCAGATAAAGAAGATCTTGTAAAAGAACTAAACGATGTTTCATTTTTAATAAGAAAG
GCTATATTTTCATATGTAGATCTTAGATATGTACCGAAATTATATTTTAAAATTGATTATCATTTTGATAATTTAGTAAG
AGTAAACCAATTATTAGAATCTAAATAA

Upstream 100 bases:

>100_bases
GCTTTGAATGTGGTATTTTACTTGATTATTCAAAAGAGATATATCCAGAAAGTGATGTTATGAATATATTTGAGATAGTA
GAAGAAATTAGAGTTATACA

Downstream 100 bases:

>100_bases
TTTCTTTTATATCTTGTTAGTTATTATTTCTAGTGTACATTGTTAATATTATTATGTGTTATTCTTGCTATATTAAATAA
TGATATTTATGATAATTTCG

Product: putative ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MIYKSESFRNLKVASVLSRAISRVLIHDIYSIGCSIVNVSKVEVSKDVKNATVFVVISDDHPDKEDLVKELNDVSFLIRK
AIFSYVDLRYVPKLYFKIDYHFDNLVRVNQLLESK

Sequences:

>Translated_115_residues
MIYKSESFRNLKVASVLSRAISRVLIHDIYSIGCSIVNVSKVEVSKDVKNATVFVVISDDHPDKEDLVKELNDVSFLIRK
AIFSYVDLRYVPKLYFKIDYHFDNLVRVNQLLESK
>Mature_115_residues
MIYKSESFRNLKVASVLSRAISRVLIHDIYSIGCSIVNVSKVEVSKDVKNATVFVVISDDHPDKEDLVKELNDVSFLIRK
AIFSYVDLRYVPKLYFKIDYHFDNLVRVNQLLESK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13313; Mature: 13313

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYKSESFRNLKVASVLSRAISRVLIHDIYSIGCSIVNVSKVEVSKDVKNATVFVVISDD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHEEEHHHHHHCCCCCCEEEEEEECC
HPDKEDLVKELNDVSFLIRKAIFSYVDLRYVPKLYFKIDYHFDNLVRVNQLLESK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHCC
>Mature Secondary Structure
MIYKSESFRNLKVASVLSRAISRVLIHDIYSIGCSIVNVSKVEVSKDVKNATVFVVISDD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHEEEHHHHHHCCCCCCEEEEEEECC
HPDKEDLVKELNDVSFLIRKAIFSYVDLRYVPKLYFKIDYHFDNLVRVNQLLESK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA