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The map label for this gene is rpoZ

Identifier: 58617026

GI number: 58617026

Start: 498480

End: 498878

Strand: Reverse

Name: rpoZ

Synonym: ERGA_CDS_02990

Alternate gene names: 58617026

Gene position: 498878-498480 (Counterclockwise)

Preceding gene: 58617027

Following gene: 58617025

Centisome position: 33.26

GC content: 32.33

Gene sequence:

>399_bases
ATGGCACGTCTTACAGTTGAAGAATGCATGGGACGCACTAACAATAAGTTTAAGTTAGTTATCTTAGCAAGTCAGAGAGC
TCATGACTTAAACTCTGGAGCATCTCCAGTAGTAAAGCATAAAAATAGTAAGAATACTATTGTTGCTTTAACAGAGATAG
CAAATGAACAGTTGGATGTGCATCTTTTATTTAACTTAGCAGTACAAAGATGCAGGAAATATATGGAAAAATTTATCAAC
TCTGATGATTCATATGTGGTTCATAAGAGCAAGGATAATATAGATATTTTTCAAAAAAATGCAACCAGTAACTTCGATGA
ACTAGGGGCTAATTCGTTAAATGTTGAGAATTCTAAGTTCTTGGATGGAGATAATTTTTTTCTAACACAAAAAGAATAA

Upstream 100 bases:

>100_bases
TACAAAAAAATAATTAGCACATTTAATAGATTCTTAAATATTGCATAATTCTCTATACATGCTATAATCAGGCTTTAGTT
TTATGTTGGGTTATTAATTA

Downstream 100 bases:

>100_bases
ATTATCTCAAAAAAAAAAAACTGTCTCATATGCTATTTTATTATGTAAGTTTCTCAGTACACACAAGAAGAAGTTTATAG
TTCTTTTATTTTTTTATGTA

Product: putative DNA-directed RNA polymerase omega chain

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MARLTVEECMGRTNNKFKLVILASQRAHDLNSGASPVVKHKNSKNTIVALTEIANEQLDVHLLFNLAVQRCRKYMEKFIN
SDDSYVVHKSKDNIDIFQKNATSNFDELGANSLNVENSKFLDGDNFFLTQKE

Sequences:

>Translated_132_residues
MARLTVEECMGRTNNKFKLVILASQRAHDLNSGASPVVKHKNSKNTIVALTEIANEQLDVHLLFNLAVQRCRKYMEKFIN
SDDSYVVHKSKDNIDIFQKNATSNFDELGANSLNVENSKFLDGDNFFLTQKE
>Mature_131_residues
ARLTVEECMGRTNNKFKLVILASQRAHDLNSGASPVVKHKNSKNTIVALTEIANEQLDVHLLFNLAVQRCRKYMEKFINS
DDSYVVHKSKDNIDIFQKNATSNFDELGANSLNVENSKFLDGDNFFLTQKE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_EHRRG (Q5FHG7)

Other databases:

- EMBL:   CR925677
- RefSeq:   YP_196225.1
- ProteinModelPortal:   Q5FHG7
- STRING:   Q5FHG7
- GeneID:   3268108
- GenomeReviews:   CR925677_GR
- KEGG:   erg:ERGA_CDS_02990
- eggNOG:   COG1758
- HOGENOM:   HBG750946
- OMA:   YMEKFIN
- ProtClustDB:   PRK00392
- BioCyc:   ERUM302409:ERGA_CDS_02990-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14994; Mature: 14863

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLTVEECMGRTNNKFKLVILASQRAHDLNSGASPVVKHKNSKNTIVALTEIANEQLDV
CCEEEHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCH
HLLFNLAVQRCRKYMEKFINSDDSYVVHKSKDNIDIFQKNATSNFDELGANSLNVENSKF
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCCCHHHHCCCCCCCCCCEE
LDGDNFFLTQKE
ECCCCEEEEECC
>Mature Secondary Structure 
ARLTVEECMGRTNNKFKLVILASQRAHDLNSGASPVVKHKNSKNTIVALTEIANEQLDV
CEEEHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCH
HLLFNLAVQRCRKYMEKFINSDDSYVVHKSKDNIDIFQKNATSNFDELGANSLNVENSKF
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCCCHHHHCCCCCCCCCCEE
LDGDNFFLTQKE
ECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA