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The map label for this gene is comF [H]

Identifier: 58616813

GI number: 58616813

Start: 141570

End: 142262

Strand: Reverse

Name: comF [H]

Synonym: ERGA_CDS_00860

Alternate gene names: 58616813

Gene position: 142262-141570 (Counterclockwise)

Preceding gene: 58616814

Following gene: 58616812

Centisome position: 9.48

GC content: 28.14

Gene sequence:

>693_bases
GTGTTTAGTAAAATTATAAGTCATATTTTCCCTAAAACATGCGCAGGCTGTGAGTGTATTATCCCTGAATGCTGTGATTT
ATGTAGTACGTGTAGTAATAACATAGACTTTCTATATGGAAACTATTGCATCTCTTGTGGTTTTAAGCTTTCAGAAGGGA
TATCAATATGTGGAAAATGTATAGCTAATAAACCAATGTTCACAAAATTAGAATCTATATTTTCATACGATAAGTATAGT
AAAAATATAATTTTAAACTTTAAGTTTTTTGATAACACATTACACATTAAAACTTATGCAAAGTGGATGTATAATAAAAA
CCCATCTTTATTTAACAATGTAACTACTATTATACCAGTACCAATACATAAAAAAAGGTTACGCCAAAGAAAATATAATC
AAGCTACATTACTTGCCAGAGCTTTAAGTAAATATTGCAACATACCTTTAGAAATTTCCGTACTAGTAAGAATTATAAAT
ACAATACCACAATACAGTCTATCTAGTAAAATGAGAAAGGAAAACATAATGCAATCTTTTATAATAAAAAACCAACACAA
GATTTATAATAAAACAATATTACTTGTAGATGATGTGGTTACAACCGGTATCACAGTTAGAACATGCTCTCAAAAACTTA
TCGAATCAGGAGCAAAAGAAATACGAGTTATTACATTAGGCAGAACATTATAA

Upstream 100 bases:

>100_bases
ACATAAAATTGACGAGCATGTGCCTGTAAAAGAAATTTATCAGTTAGCTGATATATATACAGAATTCATTAAGCAATTCT
TTAATTTATCAACAACATAA

Downstream 100 bases:

>100_bases
AATAGCACTATACATATCTATCTAAAAATACTCATCAAATTTACAAAAATTTCTTATAAATAAATTTCATCACTAAAAAA
AATGATATTACAACAAATAA

Product: putative competence protein F (DNA transformation protein comF)

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MFSKIISHIFPKTCAGCECIIPECCDLCSTCSNNIDFLYGNYCISCGFKLSEGISICGKCIANKPMFTKLESIFSYDKYS
KNIILNFKFFDNTLHIKTYAKWMYNKNPSLFNNVTTIIPVPIHKKRLRQRKYNQATLLARALSKYCNIPLEISVLVRIIN
TIPQYSLSSKMRKENIMQSFIIKNQHKIYNKTILLVDDVVTTGITVRTCSQKLIESGAKEIRVITLGRTL

Sequences:

>Translated_230_residues
MFSKIISHIFPKTCAGCECIIPECCDLCSTCSNNIDFLYGNYCISCGFKLSEGISICGKCIANKPMFTKLESIFSYDKYS
KNIILNFKFFDNTLHIKTYAKWMYNKNPSLFNNVTTIIPVPIHKKRLRQRKYNQATLLARALSKYCNIPLEISVLVRIIN
TIPQYSLSSKMRKENIMQSFIIKNQHKIYNKTILLVDDVVTTGITVRTCSQKLIESGAKEIRVITLGRTL
>Mature_230_residues
MFSKIISHIFPKTCAGCECIIPECCDLCSTCSNNIDFLYGNYCISCGFKLSEGISICGKCIANKPMFTKLESIFSYDKYS
KNIILNFKFFDNTLHIKTYAKWMYNKNPSLFNNVTTIIPVPIHKKRLRQRKYNQATLLARALSKYCNIPLEISVLVRIIN
TIPQYSLSSKMRKENIMQSFIIKNQHKIYNKTILLVDDVVTTGITVRTCSQKLIESGAKEIRVITLGRTL

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=209, Percent_Identity=26.7942583732057, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26340; Mature: 26340

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
5.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSKIISHIFPKTCAGCECIIPECCDLCSTCSNNIDFLYGNYCISCGFKLSEGISICGKC
CHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCEEECCEEEECCCCHHHHHHHHHHH
IANKPMFTKLESIFSYDKYSKNIILNFKFFDNTLHIKTYAKWMYNKNPSLFNNVTTIIPV
HCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCEEEHHHHHHHHHCCCCCHHHCCEEEEEC
PIHKKRLRQRKYNQATLLARALSKYCNIPLEISVLVRIINTIPQYSLSSKMRKENIMQSF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IIKNQHKIYNKTILLVDDVVTTGITVRTCSQKLIESGAKEIRVITLGRTL
HHHCCHHHHHCEEEEEEHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCC
>Mature Secondary Structure
MFSKIISHIFPKTCAGCECIIPECCDLCSTCSNNIDFLYGNYCISCGFKLSEGISICGKC
CHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCEEECCEEEECCCCHHHHHHHHHHH
IANKPMFTKLESIFSYDKYSKNIILNFKFFDNTLHIKTYAKWMYNKNPSLFNNVTTIIPV
HCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCEEEHHHHHHHHHCCCCCHHHCCEEEEEC
PIHKKRLRQRKYNQATLLARALSKYCNIPLEISVLVRIINTIPQYSLSSKMRKENIMQSF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IIKNQHKIYNKTILLVDDVVTTGITVRTCSQKLIESGAKEIRVITLGRTL
HHHCCHHHHHCEEEEEEHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]