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The map label for this gene is scdA [H]

Identifier: 57652519

GI number: 57652519

Start: 284503

End: 285177

Strand: Direct

Name: scdA [H]

Synonym: SACOL0244

Alternate gene names: 57652519

Gene position: 284503-285177 (Clockwise)

Preceding gene: 57652518

Following gene: 57652520

Centisome position: 10.13

GC content: 32.74

Gene sequence:

>675_bases
ATGATAAATAAAAATGACATAGTAGCAGATGTAGTAACTGATTATCCGAAAGCAGCGGATATTTTTAGAAGTGTGGGAAT
AGATTTTTGTTGTGGCGGACAAGTAAGTATAGAAGCAGCAGCCTTAGAAAAGAAAAATGTAGATTTGAACGAATTATTAC
AGCGTCTCAACGACGTTGAACAAACGAATACACCAGGTTCGTTAAATCCTAAATTTTTAAATGTTTCATCACTTATTCAA
TATATTCAATCAGCATATCATGAACCTCTAAGAGAAGAATTTAAAAATTTAACACCTTATGTGACGAAGTTATCGAAAGT
ACATGGACCTAATCATCCATATTTAGTTGAGTTAAAAGAAACATACGATACATTTAAAAATGGCATGTTAGAGCATATGC
AAAAAGAAGACGATGTCGATTTTCCAAAACTCATTAAATATGAGCAAGGTGAGGTAGTAGACGATATTAATACTGTGATA
GATGATTTAGTTTCAGACCACATTGCAACGGGAGAATTGTTAGTAAAAATGAGCGAATTAACATCTAGTTATGAACCTCC
GATAGAAGCGTGTGGTACTTGGCGACTTGTTTATCAGAGATTAAAAGCACTTGAAGTGTTAACACATGAACACGTACATT
TAGAGAATCACGTATTATTTAAAAAAGTATCATAA

Upstream 100 bases:

>100_bases
GGCTTTATTTTGCTGTTTATGACATGATTATGACATTTCCCTGATTTTCATTTTCATATACATTAAATTGTATACACTGG
AAATGAGGAGGTTATCTATA

Downstream 100 bases:

>100_bases
ATAACGCGATTAGAAACTGTTGGCAAAAATAAGTCCAGCAGTTTTTCGCTATGTATAAAAGTCATAATAGTGACATAAAC
AGCATTATTTGAAAAGAAAA

Product: cell wall biosynthesis protein ScdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAAALEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQ
YIQSAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVI
DDLVSDHIATGELLVKMSELTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS

Sequences:

>Translated_224_residues
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAAALEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQ
YIQSAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVI
DDLVSDHIATGELLVKMSELTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>Mature_224_residues
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAAALEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQ
YIQSAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVI
DDLVSDHIATGELLVKMSELTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS

Specific function: Involved in peptidoglycan cross-linking. Required for normal cell growth and development [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scdA family [H]

Homologues:

Organism=Escherichia coli, GI1790654, Length=230, Percent_Identity=28.695652173913, Blast_Score=91, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 25485; Mature: 25485

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAAALEKKNVDLNELLQRLNDVE
CCCCHHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
QTNTPGSLNPKFLNVSSLIQYIQSAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKE
HCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEHH
TYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGELLVKMSEL
HHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
>Mature Secondary Structure
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAAALEKKNVDLNELLQRLNDVE
CCCCHHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
QTNTPGSLNPKFLNVSSLIQYIQSAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKE
HCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEHH
TYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGELLVKMSEL
HHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA