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The map label for this gene is ywqM [H]

Identifier: 57652436

GI number: 57652436

Start: 80406

End: 81266

Strand: Direct

Name: ywqM [H]

Synonym: SACOL0072

Alternate gene names: 57652436

Gene position: 80406-81266 (Clockwise)

Preceding gene: 57652433

Following gene: 57652438

Centisome position: 2.86

GC content: 27.64

Gene sequence:

>861_bases
TTGAACTTAAACATTTTAAAATCATTTTTAGTAACTAGTGAAACAAAGAACCTTACTAAAGCATCAGAGTTACTTAACTA
TTCACAGTCAACTGTATCTACACATATTGAAAAATTAGAAAGGCAATTAGATGTTAAATTATTTTATAGAAAAAAATATG
GTATGGAACTAACGGAAGAAGGCTTAGCATACGTTAAATACGCTAAAGTGATTTTAGATAGTAATAGCGAATACGAGAGA
GAAATAAAAGGACTTTACAATAAGAAGGTAAATATAAGTATTAACATGCAAGAAAGTCAGTATTTGTATCGCTACTATAA
TAAGATTAGTGAATGGTTAGCTGAACACCCATATGTAAACTTGAAGTTTAAATCCGCACATTCTAATTTCTATATTAAAG
AAGAAATTGCTAATTTCAAATCGGATATTAGCCTTATCACAGACGAAAAGATTATTAATAGTAACTTAACTGCTATTCCT
ATAACTGAAGAACGTTTAATATTTGTTACTAACAAAGAGATGAAAGATTTCAAATTAAACGATATTCAAAACCATACATT
ACTTGTTACTGAAAAAGGGTGTAGTTACAGAGAACAGTTAGAAATGATTTTATATAAATATAGCTTTTCAACAAAACAAA
TGATTGAATTTCTAGGAATTGAGTCATTAAAAAAACACTTGAAAAATTCAGGTGGGATTGCGCTATTGCCGGAATTTATT
GTTGCAGATGAATTAGAAAATAAAAGTTTGTTTCAAATAGACGTAGATGTCGATATTCCGAATTTAGAAACAACATTGAT
AATTAATCCTGAATCGAATAAGCAAGTACTTGAATCTTTTGTAAAAGATGTTTTTTTATAA

Upstream 100 bases:

>100_bases
TTTCGATTTACCTTTATAATAATATTTAATATATTATTATTAAATCAGAATTCTTAGAATTCAGGATTCGATAAAAGGGA
ACCCTAAAGGAGGTACTACT

Downstream 100 bases:

>100_bases
TTATTGGTGAAAACGTGTAGTTATGGTGAAACTCAAAGATAATAATTTAAATGAGATGTTAATGAAAAAGTAATTCAATA
TAAAAACAGGTGATTTATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEEGLAYVKYAKVILDSNSEYER
EIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVNLKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIP
ITEERLIFVTNKEMKDFKLNDIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL

Sequences:

>Translated_286_residues
MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEEGLAYVKYAKVILDSNSEYER
EIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVNLKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIP
ITEERLIFVTNKEMKDFKLNDIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL
>Mature_286_residues
MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEEGLAYVKYAKVILDSNSEYER
EIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVNLKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIP
ITEERLIFVTNKEMKDFKLNDIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=262, Percent_Identity=24.0458015267176, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33411; Mature: 33411

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEE
CCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHEEEEHHCCCCHHHH
GLAYVKYAKVILDSNSEYEREIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVN
HHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCEEE
LKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIPITEERLIFVTNKEMKDFKLN
EEEECCCCCEEEHHHHHHHHHHHEEEECCHHHCCCCEEEEECCCEEEEEECCCCCCCCCC
DIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
CCCCCEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHCCCCCEEECHHHH
VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL
HHHCCCCCEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNLNILKSFLVTSETKNLTKASELLNYSQSTVSTHIEKLERQLDVKLFYRKKYGMELTEE
CCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHEEEEHHCCCCHHHH
GLAYVKYAKVILDSNSEYEREIKGLYNKKVNISINMQESQYLYRYYNKISEWLAEHPYVN
HHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCEEE
LKFKSAHSNFYIKEEIANFKSDISLITDEKIINSNLTAIPITEERLIFVTNKEMKDFKLN
EEEECCCCCEEEHHHHHHHHHHHEEEECCHHHCCCCEEEEECCCEEEEEECCCCCCCCCC
DIQNHTLLVTEKGCSYREQLEMILYKYSFSTKQMIEFLGIESLKKHLKNSGGIALLPEFI
CCCCCEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHCCCCCEEECHHHH
VADELENKSLFQIDVDVDIPNLETTLIINPESNKQVLESFVKDVFL
HHHCCCCCEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]