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The map label for this gene is cap1A

Identifier: 57652404

GI number: 57652404

Start: 2761085

End: 2761747

Strand: Reverse

Name: cap1A

Synonym: SACOL2687

Alternate gene names: 57652404

Gene position: 2761747-2761085 (Counterclockwise)

Preceding gene: 57652405

Following gene: 57652403

Centisome position: 98.3

GC content: 28.36

Gene sequence:

>663_bases
ATGAAAGAAAAGTTTGATTTAGTAAAACTATTAAATATTCTAAAGAAGAATATTAAATTATTGCTTATTTTACCGGCAAT
ATGTCTTGTAGTAAGTGCGGCATTAACCTTTTTTGTTATGCCTGACAAATATACTGCTTCTACTCAAATATTAGTGAACA
TGAAAAAGTCCTCAAGTGATTTAGCTTTCCAAAATGTTCAAAGTAGTTTGCAGTCTGTTAATACATATACGGAAATTATC
AAAAGTCCTAGAATTCTAGATAAAGTATCTAGAGAATTTGATGGTCAGTATTCAACAGCTGAGTTGAATTCATTTTTAAA
AGTAACCAATCAAACAAACTCTCAAATTATTACTGTATCAGTTACCACTGGGAATAAATCTGAATCTGACAAAATTGTTA
ATAAAATATCTAAAGTTTTTGCTCATGACATGCCTAAAATTATGAGTGTTGATAATGTTACGATACTTTCCTCAGCACAT
GATAATGCTGTAAAAGTATCTCCAATAGTATCTGTCAACTTAGTTATCAGCATTATTGTTGGTATTGTTTTAGCAATATT
GATTATTTTCTTAAAAGAATTATTAGATAAGCGTATTAAGACAGAAGAAGATGTTGAATCGCAACTAGGATTACCTATTT
TAGGTTCAATACAAAAATTTTAA

Upstream 100 bases:

>100_bases
AATGTAGTTGTGTATGTTTTGTGGTCGTTAAACTAGATATAATTGTCCGATTTATAAAACATACATAATGAATACAATGA
TTGATTATGTGGAGGAAACC

Downstream 100 bases:

>100_bases
TTTACGAGGAATTACCATGACGAATACACGAAGAAGTACATCAAGTTTAATTGTCCATGAACAACCAAAGTCACCTATTA
GCGAGAAATTTCGAGGCATA

Product: capsular polysaccharide biosynthesis protein Cap1A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEII
KSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVSVTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAH
DNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF

Sequences:

>Translated_220_residues
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEII
KSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVSVTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAH
DNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
>Mature_220_residues
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEII
KSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVSVTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAH
DNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide

COG id: COG3944

COG function: function code M; Capsular polysaccharide biosynthesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpsC/CapA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAPA_STAAC (Q5HCN3)

Other databases:

- EMBL:   CP000046
- RefSeq:   YP_187474.1
- STRING:   Q5HCN3
- EnsemblBacteria:   EBSTAT00000010909
- GeneID:   3237016
- GenomeReviews:   CP000046_GR
- KEGG:   sac:SACOL2687
- TIGR:   SACOL2687
- eggNOG:   COG3944
- GeneTree:   EBGT00050000024205
- HOGENOM:   HBG697325
- OMA:   YLANDYK
- ProtClustDB:   CLSK886140
- BioCyc:   SAUR93062:SACOL2687-MONOMER
- InterPro:   IPR003856

Pfam domain/function: PF02706 Wzz

EC number: NA

Molecular weight: Translated: 24340; Mature: 24340

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf17dcf4)-; HASH(0x108172b4)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCH
LAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEE
VTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIV
EECCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCEEECHHHHHHHHHHHHH
GIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHCCH
>Mature Secondary Structure
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCH
LAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEE
VTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIV
EECCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCEEECHHHHHHHHHHHHH
GIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA