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The map label for this gene is rplR

Identifier: 57238698

GI number: 57238698

Start: 1748921

End: 1749277

Strand: Reverse

Name: rplR

Synonym: CJE1859

Alternate gene names: 57238698

Gene position: 1749277-1748921 (Counterclockwise)

Preceding gene: 57238699

Following gene: 57238697

Centisome position: 98.39

GC content: 31.09

Gene sequence:

>357_bases
ATGAGAGCAAATGTATTAAAAAGAAAACTAACTTTAAGAATCAAAAGAAAAAAAAGAATTAGAGCGAAAATTTCAGGTTG
TGAAAATTTTCCAAGAATTTCTGTATTTAAATCGAACAGAACTCTATATATCCAAGCGATTGATGATGTAAAAGCTGTAA
CTTTAGCAGCAGTTGATGGACGCAAACTTGGCGTTAAAGCAAATAAAGAAGGTGCTAAAAAAATCGCTGCTGAATTTGCT
AAAACTTTAAAAGCTAAAAAGATAGAACAAGCTGTTTTTGATAGAAATGGTTATGTATATCATGGTGTTATCGCAGCATT
GGCTGAATCTTTAAGAGAAAATGGCATTAGGCTATAA

Upstream 100 bases:

>100_bases
ATTTAGACCACCAGAGCCATATAAAGGAAAAGGCGTTAAGTATTCTGATGAACGTATTATCCGCAAAGCTGGTAAGACAT
CTAAGAAGTAAGGGTAGAAT

Downstream 100 bases:

>100_bases
GGGGTAAATCGATGGAAAAATATAATAGAGAAGAATTTGAAGAAGTAATCGTCGATATCGGCAGAGTTACTAAGGTTGTT
AAAGGTGGTAGAAGATTTAG

Product: 50S ribosomal protein L18

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYIQAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFA
KTLKAKKIEQAVFDRNGYVYHGVIAALAESLRENGIRL

Sequences:

>Translated_118_residues
MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYIQAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFA
KTLKAKKIEQAVFDRNGYVYHGVIAALAESLRENGIRL
>Mature_118_residues
MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYIQAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFA
KTLKAKKIEQAVFDRNGYVYHGVIAALAESLRENGIRL

Specific function: This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance

COG id: COG0256

COG function: function code J; Ribosomal protein L18

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL18_CAMJ8 (A8FP05)

Other databases:

- EMBL:   CP000814
- RefSeq:   YP_001483169.1
- ProteinModelPortal:   A8FP05
- SMR:   A8FP05
- STRING:   A8FP05
- GeneID:   5617012
- GenomeReviews:   CP000814_GR
- KEGG:   cju:C8J_1595
- eggNOG:   COG0256
- HOGENOM:   HBG602198
- OMA:   FRSNRYL
- ProtClustDB:   PRK05593
- BioCyc:   CJEJ407148:C8J_1595-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01337_B
- InterPro:   IPR005484
- InterPro:   IPR004389
- TIGRFAMs:   TIGR00060

Pfam domain/function: PF00861 Ribosomal_L18p

EC number: NA

Molecular weight: Translated: 13239; Mature: 13239

Theoretical pI: Translated: 11.36; Mature: 11.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYIQAIDDVKAVTLAAVDG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEECC
RKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHGVIAALAESLRENGIRL
CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYIQAIDDVKAVTLAAVDG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEECC
RKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHGVIAALAESLRENGIRL
CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA