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The map label for this gene is fdhD [H]

Identifier: 57238531

GI number: 57238531

Start: 1582393

End: 1583175

Strand: Reverse

Name: fdhD [H]

Synonym: CJE1681

Alternate gene names: 57238531

Gene position: 1583175-1582393 (Counterclockwise)

Preceding gene: 57238532

Following gene: 57238530

Centisome position: 89.05

GC content: 32.44

Gene sequence:

>783_bases
ATGGATCCGTTATTTACAACTCAAATTTTAAAATATAAAGGCAATGAATCTTTTACATGTGATGATACTTTAGTGCGTGA
AATTAAGCTTGAAATTTTTATTAATGATGAAAAAGTAGGTGCTTTAATGGCAACTCCTGTAGATGAACAGGCATTAGCAA
TAGGATATTTAATGAGTGAAAATATCATTGCGAAAGTAAGTGATATTGAGAGTATAGAAACAAAAGATGATGGTATGAGT
GTGCATATTAAAGCAAAGATTGATAAAGAAAATTTAGCAAAGCTTAATGCTGAAGGTGTAGTTATAAGTGGTTGTGGTAG
AGCACATACTGCAAATATCGATCCAGAAGCGATTGAAGCGAGTAAAATTAGTTCTGATGCAAAATTTAGCAAAGGTGAAA
TTTTAAAACAAATGAGTACTTTTTATACTCAATGCGAGCTTTACGAGAAAACAGGCTGTGTGCATACGGCTAAGCTTTTT
GTAGATGAGAAAACTTTTTTTATAGGTGAAGATATAGCTCAACATAATACCATAGATAAAGCTTTAGGAAAAGCACATTT
AGCTGGGGTTGATTTAAGTCAATGTTTTTTAATGGTTAGTGGAAGGCTAAGTTCTGAAATGGTAGCTAAAGCAGTTATGC
ATAAAATTCCAGTGCTTGTTTCACGCACGGCTCCTACTTGTTTAGGGGTTATGATAGCAAGAAAATTTGATTTAACGCTT
TGTGGTTTTGCTAGAGAAAATAAGATCAATATTTATAGTGGAGAATTTAGAATTCATGGATAA

Upstream 100 bases:

>100_bases
TATTTTATAAGTTGAATCTAAAATCTATTTTTCCATATGTGAATTTGTTATTTATGTTTTTTTGATATAATATTATTTAA
AGATATTTAAAGGATAAGGT

Downstream 100 bases:

>100_bases
AAATCAAGAAAAAGAAATCATCTCATATATGAGAGAATTGTTAAATAGCAATGAAAAATTAGATTGTGGTACGGCTTTTA
AAATTGCAAAGAAATTTAAT

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MDPLFTTQILKYKGNESFTCDDTLVREIKLEIFINDEKVGALMATPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMS
VHIKAKIDKENLAKLNAEGVVISGCGRAHTANIDPEAIEASKISSDAKFSKGEILKQMSTFYTQCELYEKTGCVHTAKLF
VDEKTFFIGEDIAQHNTIDKALGKAHLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPVLVSRTAPTCLGVMIARKFDLTL
CGFARENKINIYSGEFRIHG

Sequences:

>Translated_260_residues
MDPLFTTQILKYKGNESFTCDDTLVREIKLEIFINDEKVGALMATPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMS
VHIKAKIDKENLAKLNAEGVVISGCGRAHTANIDPEAIEASKISSDAKFSKGEILKQMSTFYTQCELYEKTGCVHTAKLF
VDEKTFFIGEDIAQHNTIDKALGKAHLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPVLVSRTAPTCLGVMIARKFDLTL
CGFARENKINIYSGEFRIHG
>Mature_260_residues
MDPLFTTQILKYKGNESFTCDDTLVREIKLEIFINDEKVGALMATPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMS
VHIKAKIDKENLAKLNAEGVVISGCGRAHTANIDPEAIEASKISSDAKFSKGEILKQMSTFYTQCELYEKTGCVHTAKLF
VDEKTFFIGEDIAQHNTIDKALGKAHLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPVLVSRTAPTCLGVMIARKFDLTL
CGFARENKINIYSGEFRIHG

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=244, Percent_Identity=24.5901639344262, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 28590; Mature: 28590

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPLFTTQILKYKGNESFTCDDTLVREIKLEIFINDEKVGALMATPVDEQALAIGYLMSE
CCCCHHHHHEEECCCCCCCCHHHHHEEEEEEEEECCCCCCEEEECCCCCHHHHHHHHHCC
NIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVISGCGRAHTANIDPEAIEA
CCEEEHHCCHHCCCCCCCEEEEEEEEECHHHHHHCCCCCEEEECCCCCEECCCCHHHHHH
SKISSDAKFSKGEILKQMSTFYTQCELYEKTGCVHTAKLFVDEKTFFIGEDIAQHNTIDK
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCEEEECCHHHHCCHHHH
ALGKAHLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPVLVSRTAPTCLGVMIARKFDLTL
HHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCEEE
CGFARENKINIYSGEFRIHG
ECCCCCCEEEEEECEEEECC
>Mature Secondary Structure
MDPLFTTQILKYKGNESFTCDDTLVREIKLEIFINDEKVGALMATPVDEQALAIGYLMSE
CCCCHHHHHEEECCCCCCCCHHHHHEEEEEEEEECCCCCCEEEECCCCCHHHHHHHHHCC
NIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVISGCGRAHTANIDPEAIEA
CCEEEHHCCHHCCCCCCCEEEEEEEEECHHHHHHCCCCCEEEECCCCCEECCCCHHHHHH
SKISSDAKFSKGEILKQMSTFYTQCELYEKTGCVHTAKLFVDEKTFFIGEDIAQHNTIDK
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCEEEECCHHHHCCHHHH
ALGKAHLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPVLVSRTAPTCLGVMIARKFDLTL
HHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCEEE
CGFARENKINIYSGEFRIHG
ECCCCCCEEEEEECEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1781728; 14500908 [H]