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The map label for this gene is cadF [H]

Identifier: 57238501

GI number: 57238501

Start: 1552478

End: 1553437

Strand: Reverse

Name: cadF [H]

Synonym: CJE1651

Alternate gene names: 57238501

Gene position: 1553437-1552478 (Counterclockwise)

Preceding gene: 57238502

Following gene: 57238500

Centisome position: 87.38

GC content: 31.77

Gene sequence:

>960_bases
ATGAAAAAAATATTCTTATGTTTAGGTTTGGCAAGTGTTTTATTTGGTGCTGATAACAATGTAAAATTTGAAATCACTCC
AACTTTAAACCATAATTACTTTGAAGGTAATTTAGATATGGATAATCGTTATGCACCAGGGATTAGACTTGGTTATCATT
TTGACGATTTTTGGCTTGATCAATTAGAATTTGGGTTAGAGCATTATTCTGATGTTAAATATACAAATACAAATAAAACT
ACAGATATTACAAGAACTTATTTGAGTGCTATTAAAGGTATTGATGTAGGTGAGAAATTTTATTTCTATGGTTTAGCAGG
TGGAGGATATGAGGATTTTTCAAATGCTGCTTATGATAATAAAAGCGGTGGATTTGGACATTATGGCGCGGGTGTAAAAT
TCCGTCTTAGTGATTCTTTGGCTTTAAGACTTGAAACTAGAGATCAAATTAATTTCAATCATGCAAACCATAATTGGGTT
TCAACTTTAGGTATTAGTTTTGGTTTTGGTGGCAAAAAGGAAAAAGCTGTAGAAGAAGTTGCTGATACTCGTGCAACTCC
ACAAGTAAAATGTCCTGTTGAACCAAGAGAAGGTGCTTTGTTAGATGAAAATGGTTGCGAAAAAACTATTTCTTTGGAAG
GTCATTTTGGTTTTGATAAAACTACTATAAATCCAACTTTTCAAGAAAAAATCAAAGAAATTGCAAAAGTTTTAGATGAA
AATGAAAGATATGATACTATTCTTGAAGGACATACAGATAATATCGGTTCAAGAGCTTATAATCAAAAGCTTTCTGAAAG
ACGTGCTAAAAGTGTTGCTAATGAACTTGAAAAATATGGTGTAGAAAAAAGTCGCATCAAAACAGTAGGTTATGGTCAAG
ATAATCCTCGCTCAAGCAATGACACTAAAGAAGGTAGAGCGGATAATAGAAGAGTGGATGCTAAATTTATTTTAAGATAA

Upstream 100 bases:

>100_bases
TTTCTACAATTTTTTATAAAACTCATCCTTTTTTCTATCATTTATGTTATAATTGCAAAATTTAAATTTTTATTTTATAA
CACAATGAAAGGTTTTTTCT

Downstream 100 bases:

>100_bases
TGAATAAAACTATTTTATTTGATTTAGATGGCACTTTAATTGATTCTACTGATGCTATTTTAAATTCTTTCCAAGGAGTT
TTTAAAGCCCTTGGATTAAC

Product: fibronectin-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKKIFLCLGLASVLFGADNNVKFEITPTLNHNYFEGNLDMDNRYAPGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKT
TDITRTYLSAIKGIDVGEKFYFYGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
STLGISFGFGGKKEKAVEEVADTRATPQVKCPVEPREGALLDENGCEKTISLEGHFGFDKTTINPTFQEKIKEIAKVLDE
NERYDTILEGHTDNIGSRAYNQKLSERRAKSVANELEKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR

Sequences:

>Translated_319_residues
MKKIFLCLGLASVLFGADNNVKFEITPTLNHNYFEGNLDMDNRYAPGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKT
TDITRTYLSAIKGIDVGEKFYFYGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
STLGISFGFGGKKEKAVEEVADTRATPQVKCPVEPREGALLDENGCEKTISLEGHFGFDKTTINPTFQEKIKEIAKVLDE
NERYDTILEGHTDNIGSRAYNQKLSERRAKSVANELEKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR
>Mature_319_residues
MKKIFLCLGLASVLFGADNNVKFEITPTLNHNYFEGNLDMDNRYAPGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKT
TDITRTYLSAIKGIDVGEKFYFYGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
STLGISFGFGGKKEKAVEEVADTRATPQVKCPVEPREGALLDENGCEKTISLEGHFGFDKTTINPTFQEKIKEIAKVLDE
NERYDTILEGHTDNIGSRAYNQKLSERRAKSVANELEKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=118, Percent_Identity=36.4406779661017, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787191, Length=199, Percent_Identity=28.643216080402, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788957, Length=89, Percent_Identity=39.3258426966292, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 35999; Mature: 35999

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIFLCLGLASVLFGADNNVKFEITPTLNHNYFEGNLDMDNRYAPGIRLGYHFDDFWLD
CCEEEHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCHHHHH
QLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYFYGLAGGGYEDFSNAAYDN
HHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCC
KSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWVSTLGISFGFGGKKEKAVEEV
CCCCCCCCCCCEEEEECCCEEEEEECCCCEEECCCCCCEEEEEEEEECCCCCHHHHHHHH
ADTRATPQVKCPVEPREGALLDENGCEKTISLEGHFGFDKTTINPTFQEKIKEIAKVLDE
HHCCCCCCEECCCCCCCCCEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
NERYDTILEGHTDNIGSRAYNQKLSERRAKSVANELEKYGVEKSRIKTVGYGQDNPRSSN
CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCC
DTKEGRADNRRVDAKFILR
CCCCCCCCCCEECEEEECC
>Mature Secondary Structure
MKKIFLCLGLASVLFGADNNVKFEITPTLNHNYFEGNLDMDNRYAPGIRLGYHFDDFWLD
CCEEEHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCHHHHH
QLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYFYGLAGGGYEDFSNAAYDN
HHHHHHHHHCCCEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCC
KSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWVSTLGISFGFGGKKEKAVEEV
CCCCCCCCCCCEEEEECCCEEEEEECCCCEEECCCCCCEEEEEEEEECCCCCHHHHHHHH
ADTRATPQVKCPVEPREGALLDENGCEKTISLEGHFGFDKTTINPTFQEKIKEIAKVLDE
HHCCCCCCEECCCCCCCCCEECCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
NERYDTILEGHTDNIGSRAYNQKLSERRAKSVANELEKYGVEKSRIKTVGYGQDNPRSSN
CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCC
DTKEGRADNRRVDAKFILR
CCCCCCCCCCEECEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]