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The map label for this gene is yfjR [H]

Identifier: 57238233

GI number: 57238233

Start: 608545

End: 609417

Strand: Direct

Name: yfjR [H]

Synonym: CJE0674

Alternate gene names: 57238233

Gene position: 608545-609417 (Clockwise)

Preceding gene: 57238234

Following gene: 57238232

Centisome position: 34.23

GC content: 28.87

Gene sequence:

>873_bases
ATGAAAGAATACGACAAATTAAGCATACGCTTGGTGCAGATTTTATCAAAATTTAACAATGGGGAAAGTCTAAGCGCCCA
AGAGCTTGCACAAGAGTTTAATGTCGATACAAGAACCATACAAAGGGATCTTAACGAAAGACTTACTTTTATGCCTATTA
AAAAAGAAAATGGAAGATATGTTTTAGAAAGCTTTGCTTTGGGAAAATTAAGCTTTAAAGACATACAGAATTTTGCCACC
TTAAGTGGTATTGCTGAGCTTTATCCAAAACTCGATCAAGGCTTTATAGTCGATCTTTTAAGCCATAGGGTAAATAAAGT
TTTGATGGTAAAAAATGAAGGTTTTCAAAAGGTGGATTATGAGCTTTTTAAAGATCTTAGTGTAGCTATACTCAAACACA
ATGTATTGAATTTTTTCTACAAGAAAAAAGAACGCCAAATCAAACCTTACAAACTCGTAAATTACAAAGGAATTTGGTAT
CTTTTAGGGGATGAAAATGATAAATTAAAACATTTTAATTTAGATAAAATTTCAAAACTTCGCACTAAAAATGAAAATTT
TATTCCCAATGAAAAACTTCAAGAACAAATCCAAAATGATCCTAATATCTGGCTTGGAGAAAGCAAAGAAGTGATTTTAA
AACTTGATAAAAATGCTAAGGAATATTTTTTTAGAAAAGAAATACTAAGTAATTATCAAATCATTGATAAAGATGAAACA
AGCTATACTTTAAGCACTCAAGTTTCCTATGAAGATGAAATTTTACATTTGGTTAAACAGTGGATTCCTTATATAAAAAT
TCTAGCTCCTATAGAACTGAAAATACGGCTAGAAGATATTTTAAAAAGTTATTTAAACAATCTATCTAAATAA

Upstream 100 bases:

>100_bases
AAGCCCCAAGTTTAAATGAAGTCAAAAAACTTAGAAATGAAATTTTAGGCATAGAAGGCGTAAGTTTGTTAAAAAGCATT
TTAACTCACAAGGAAATTTC

Downstream 100 bases:

>100_bases
AATTTATTTTAAATCCTTAACTGGTTGCGAAGGGGAGATTTGAACTCCCGACCTTCGGGTTATGAGCCCGACGAGCTAAC
CACTGCTCTACTTCGCGGCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDLNERLTFMPIKKENGRYVLESFALGKLSFKDIQNFAT
LSGIAELYPKLDQGFIVDLLSHRVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKKKERQIKPYKLVNYKGIWY
LLGDENDKLKHFNLDKISKLRTKNENFIPNEKLQEQIQNDPNIWLGESKEVILKLDKNAKEYFFRKEILSNYQIIDKDET
SYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIRLEDILKSYLNNLSK

Sequences:

>Translated_290_residues
MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDLNERLTFMPIKKENGRYVLESFALGKLSFKDIQNFAT
LSGIAELYPKLDQGFIVDLLSHRVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKKKERQIKPYKLVNYKGIWY
LLGDENDKLKHFNLDKISKLRTKNENFIPNEKLQEQIQNDPNIWLGESKEVILKLDKNAKEYFFRKEILSNYQIIDKDET
SYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIRLEDILKSYLNNLSK
>Mature_290_residues
MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDLNERLTFMPIKKENGRYVLESFALGKLSFKDIQNFAT
LSGIAELYPKLDQGFIVDLLSHRVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKKKERQIKPYKLVNYKGIWY
LLGDENDKLKHFNLDKISKLRTKNENFIPNEKLQEQIQNDPNIWLGESKEVILKLDKNAKEYFFRKEILSNYQIIDKDET
SYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIRLEDILKSYLNNLSK

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788988, Length=202, Percent_Identity=27.7227722772277, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 34341; Mature: 34341

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDLNERLTFMPIKKENGRY
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEEEEECCCCCE
VLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSHRVNKVLMVKNEGFQKVDY
EEEHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCEEEEEECCCCCHHHH
ELFKDLSVAILKHNVLNFFYKKKERQIKPYKLVNYKGIWYLLGDENDKLKHFNLDKISKL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEECCCCCCEEECCHHHHHHH
RTKNENFIPNEKLQEQIQNDPNIWLGESKEVILKLDKNAKEYFFRKEILSNYQIIDKDET
HCCCCCCCCCHHHHHHHCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHCCCEEEECCCC
SYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIRLEDILKSYLNNLSK
CEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCC
>Mature Secondary Structure
MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDLNERLTFMPIKKENGRY
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEEEEECCCCCE
VLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSHRVNKVLMVKNEGFQKVDY
EEEHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCEEEEEECCCCCHHHH
ELFKDLSVAILKHNVLNFFYKKKERQIKPYKLVNYKGIWYLLGDENDKLKHFNLDKISKL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEECCCCCCEEECCHHHHHHH
RTKNENFIPNEKLQEQIQNDPNIWLGESKEVILKLDKNAKEYFFRKEILSNYQIIDKDET
HCCCCCCCCCHHHHHHHCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHCCCEEEECCCC
SYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIRLEDILKSYLNNLSK
CEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]