| Definition | Campylobacter jejuni RM1221, complete genome. |
|---|---|
| Accession | NC_003912 |
| Length | 1,777,831 |
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The map label for this gene is yhdJ [C]
Identifier: 57238177
GI number: 57238177
Start: 663944
End: 665971
Strand: Direct
Name: yhdJ [C]
Synonym: CJE0731
Alternate gene names: 57238177
Gene position: 663944-665971 (Clockwise)
Preceding gene: 57238178
Following gene: 57236942
Centisome position: 37.35
GC content: 25.1
Gene sequence:
>2028_bases ATGCTAAAAGATAAATTATTGCAAGATTTAGAAGAACATTTTGAAACTTTAGGACAAGTTAGAAATTTAGCACAAAATTA TGATGAAAGATTGTTTAATTATCTTTTAGAAGAAAGTAAATATAAAGAAGAATTTAAAAATAGATTTTTTATTTTTAATA AAAAAGTTTTGATTTTTAAAATAAATGAATTTTTAACATTTTTAGATCTTAAAAATTTAAGTGGTAGCTTTACAAGCTAT GCTAACAAAATAGGACTTGCAAATAAAACAAAATCTCTTTTAAAAACAAATAACGAAGTAGTATTAAATTTTGCTTTTAA AGATGGCATTATAAAAGGCGGACAAAGTAAAGATGAGCAAAAAACACAAGAGATATTTTTCAATGAAATACTAGCTCATG ATGAAATAGATGTGTTATTTGATAAAAAAGCTTTGCAGAATTTTGAACTAATAGGTGAAATAAAAAATTTACAAGAATAT TTAAAAAATAATCCAAATTTGCTCATAAAAGGCAATAATTTACTAGTGTTACATTCTTTAAAAAAGCTTTATGCAAATAA AATAAAATTAATCTACATTGATCCACCTTATAATACGGGTAATGATAGTTTTGGTTATAATGACAAATTTAAACACTCTA CTTGGCTTACTTTTATGAAAAATCGCCTTGAAATTGCTAAGGAATTTTTAAGAGATGATGGTGTGATTTTTGTGCAATGT GATGATAATGAACAAGCATATTTAAAAGTACTTATGGATGAGATTTTTGGAAGAGATAATTTTGTAAATAGTATAGCTGT TAAATTAAAAAATATTGCAGGAGCAAGTGGAGGAGGAGAAGATAAAAGATTTAAGAAAAATATAGAGTATATTTTAATTT ATGGTAAAAGTTATGAAAAATTAGAACAATTTAAATCTGTATATGATTCTAGAGAATTGTATTCTCATATAAGTTTTTGT AAAGAAAATAATATTAGTTGGAAATATACTTCGGCTCTACTCAATGGCGGTGAAAAAAAGTTAATAGCTACAACACTTGA TGGTGATGGCAATGAAATTAAAATTTTTGAAAGAATTAATTATGATATAAAATCCATAGGACAAATGATAAAAGATTTTA AAATGAATGAGAAAGAAATTTTTTATCATTATGTAAATAAAATTTTTAGAACCACGATGCCACAAAGTTCAATTAGAGTG AGAGTTCTTGAAAAATTAAAAGAATTAAATTTAAGTCCTTATCTTATATCTATAGAATATACCCCAAAAAGTGGAAGAAA TAAAGGTGTTGTATACGAGCAATTTTATAATGGAGAAAAATTAAATTTATTCGCATGGCTAAAAGATGTTGTAGAAATTA AAGATAAGCAAATTTTTAAAAAAGAATTAGCTGGAACTTTATGGGATTTTGCTTTCGCAATGACAAATTTAACAAAAGAA GGGGATACTCAATTTAGCAATGCAAAAAAACCCGAAGCTTTACTTCAAAGAATTATAGAAATTTCTACAAATGAAAACGA CATAGTAATGGATTTTTTTGCGGGAAGTGGCACTACTCTAGCCGTTGCTCATAAAATGAAACGCAAATGGATAGGCATAG AACAAATGGATTATATAGAAACTATCACAAAAGAAAGACTCAAAAAAGTCATAGAAGGTGAGCAAGGTGGTATCAGCAAA GCAATAAATTGGCAAGGTGGTGGAAATTTTGTTTATGCTGAGCTTATGCCACTTAATGCAATTTATAAAGAAAAAATACA AAATTTAAATGATGAAAAAGAACTAGATAATATTTATCAAGAGTTAAAAACCAAAGCTTTTTTAGATTATAGAGTAGATA TAAATGAAATTTTAAAAGATAAAGAATTTGAAAATTTAGACTTAGAAAGCAAAAAAGAAATTTTAAAACTTGTTTTAGAC TCTAATATGGATTATCTTTTATATGGTGATATAAAAGATGAAGATTATGCCTTGTCTAAAGAAATAATAAAACTTAATAA AATATTTTATGGTGATGAAAATGTTTAA
Upstream 100 bases:
>100_bases GAGTGAGATAATAAATTTAGAAACATTGTTTTTTGTTTGATTTTATATAATTTCTAGTATTATAATAAAATAAAATTTTT AATTTTACAAGGATTAAAAT
Downstream 100 bases:
>100_bases TAAAAAACTACACGAGCTTTTACAAGAAGAATTTGGAAAAAGAGGTATAGAGCAAATAGAAATTCCTTTTTACGTAAAAG AGAATTTATCAAAAGAATTA
Product: type III restriction/modification enzyme, methylase subunit
Products: NA
Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]
Number of amino acids: Translated: 675; Mature: 675
Protein sequence:
>675_residues MLKDKLLQDLEEHFETLGQVRNLAQNYDERLFNYLLEESKYKEEFKNRFFIFNKKVLIFKINEFLTFLDLKNLSGSFTSY ANKIGLANKTKSLLKTNNEVVLNFAFKDGIIKGGQSKDEQKTQEIFFNEILAHDEIDVLFDKKALQNFELIGEIKNLQEY LKNNPNLLIKGNNLLVLHSLKKLYANKIKLIYIDPPYNTGNDSFGYNDKFKHSTWLTFMKNRLEIAKEFLRDDGVIFVQC DDNEQAYLKVLMDEIFGRDNFVNSIAVKLKNIAGASGGGEDKRFKKNIEYILIYGKSYEKLEQFKSVYDSRELYSHISFC KENNISWKYTSALLNGGEKKLIATTLDGDGNEIKIFERINYDIKSIGQMIKDFKMNEKEIFYHYVNKIFRTTMPQSSIRV RVLEKLKELNLSPYLISIEYTPKSGRNKGVVYEQFYNGEKLNLFAWLKDVVEIKDKQIFKKELAGTLWDFAFAMTNLTKE GDTQFSNAKKPEALLQRIIEISTNENDIVMDFFAGSGTTLAVAHKMKRKWIGIEQMDYIETITKERLKKVIEGEQGGISK AINWQGGGNFVYAELMPLNAIYKEKIQNLNDEKELDNIYQELKTKAFLDYRVDINEILKDKEFENLDLESKKEILKLVLD SNMDYLLYGDIKDEDYALSKEIIKLNKIFYGDENV
Sequences:
>Translated_675_residues MLKDKLLQDLEEHFETLGQVRNLAQNYDERLFNYLLEESKYKEEFKNRFFIFNKKVLIFKINEFLTFLDLKNLSGSFTSY ANKIGLANKTKSLLKTNNEVVLNFAFKDGIIKGGQSKDEQKTQEIFFNEILAHDEIDVLFDKKALQNFELIGEIKNLQEY LKNNPNLLIKGNNLLVLHSLKKLYANKIKLIYIDPPYNTGNDSFGYNDKFKHSTWLTFMKNRLEIAKEFLRDDGVIFVQC DDNEQAYLKVLMDEIFGRDNFVNSIAVKLKNIAGASGGGEDKRFKKNIEYILIYGKSYEKLEQFKSVYDSRELYSHISFC KENNISWKYTSALLNGGEKKLIATTLDGDGNEIKIFERINYDIKSIGQMIKDFKMNEKEIFYHYVNKIFRTTMPQSSIRV RVLEKLKELNLSPYLISIEYTPKSGRNKGVVYEQFYNGEKLNLFAWLKDVVEIKDKQIFKKELAGTLWDFAFAMTNLTKE GDTQFSNAKKPEALLQRIIEISTNENDIVMDFFAGSGTTLAVAHKMKRKWIGIEQMDYIETITKERLKKVIEGEQGGISK AINWQGGGNFVYAELMPLNAIYKEKIQNLNDEKELDNIYQELKTKAFLDYRVDINEILKDKEFENLDLESKKEILKLVLD SNMDYLLYGDIKDEDYALSKEIIKLNKIFYGDENV >Mature_675_residues MLKDKLLQDLEEHFETLGQVRNLAQNYDERLFNYLLEESKYKEEFKNRFFIFNKKVLIFKINEFLTFLDLKNLSGSFTSY ANKIGLANKTKSLLKTNNEVVLNFAFKDGIIKGGQSKDEQKTQEIFFNEILAHDEIDVLFDKKALQNFELIGEIKNLQEY LKNNPNLLIKGNNLLVLHSLKKLYANKIKLIYIDPPYNTGNDSFGYNDKFKHSTWLTFMKNRLEIAKEFLRDDGVIFVQC DDNEQAYLKVLMDEIFGRDNFVNSIAVKLKNIAGASGGGEDKRFKKNIEYILIYGKSYEKLEQFKSVYDSRELYSHISFC KENNISWKYTSALLNGGEKKLIATTLDGDGNEIKIFERINYDIKSIGQMIKDFKMNEKEIFYHYVNKIFRTTMPQSSIRV RVLEKLKELNLSPYLISIEYTPKSGRNKGVVYEQFYNGEKLNLFAWLKDVVEIKDKQIFKKELAGTLWDFAFAMTNLTKE GDTQFSNAKKPEALLQRIIEISTNENDIVMDFFAGSGTTLAVAHKMKRKWIGIEQMDYIETITKERLKKVIEGEQGGISK AINWQGGGNFVYAELMPLNAIYKEKIQNLNDEKELDNIYQELKTKAFLDYRVDINEILKDKEFENLDLESKKEILKLVLD SNMDYLLYGDIKDEDYALSKEIIKLNKIFYGDENV
Specific function: Unknown
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR002052 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 78736; Mature: 78736
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKDKLLQDLEEHFETLGQVRNLAQNYDERLFNYLLEESKYKEEFKNRFFIFNKKVLIFK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEEEE INEFLTFLDLKNLSGSFTSYANKIGLANKTKSLLKTNNEVVLNFAFKDGIIKGGQSKDEQ HHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHH KTQEIFFNEILAHDEIDVLFDKKALQNFELIGEIKNLQEYLKNNPNLLIKGNNLLVLHSL HHHHHHHHHHHCCCCHHHEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEHHH KKLYANKIKLIYIDPPYNTGNDSFGYNDKFKHSTWLTFMKNRLEIAKEFLRDDGVIFVQC HHHHHCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE DDNEQAYLKVLMDEIFGRDNFVNSIAVKLKNIAGASGGGEDKRFKKNIEYILIYGKSYEK CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEECCCHHH LEQFKSVYDSRELYSHISFCKENNISWKYTSALLNGGEKKLIATTLDGDGNEIKIFERIN HHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCEEEEEEECCCCCEEEEEEECC YDIKSIGQMIKDFKMNEKEIFYHYVNKIFRTTMPQSSIRVRVLEKLKELNLSPYLISIEY CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEE TPKSGRNKGVVYEQFYNGEKLNLFAWLKDVVEIKDKQIFKKELAGTLWDFAFAMTNLTKE CCCCCCCCCEEEHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GDTQFSNAKKPEALLQRIIEISTNENDIVMDFFAGSGTTLAVAHKMKRKWIGIEQMDYIE CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEHHHHHHHHHHCCCHHHHHHH TITKERLKKVIEGEQGGISKAINWQGGGNFVYAELMPLNAIYKEKIQNLNDEKELDNIYQ HHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHH ELKTKAFLDYRVDINEILKDKEFENLDLESKKEILKLVLDSNMDYLLYGDIKDEDYALSK HHHHHHHHEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH EIIKLNKIFYGDENV HHHHHHHEEECCCCC >Mature Secondary Structure MLKDKLLQDLEEHFETLGQVRNLAQNYDERLFNYLLEESKYKEEFKNRFFIFNKKVLIFK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEEEE INEFLTFLDLKNLSGSFTSYANKIGLANKTKSLLKTNNEVVLNFAFKDGIIKGGQSKDEQ HHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHH KTQEIFFNEILAHDEIDVLFDKKALQNFELIGEIKNLQEYLKNNPNLLIKGNNLLVLHSL HHHHHHHHHHHCCCCHHHEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEHHH KKLYANKIKLIYIDPPYNTGNDSFGYNDKFKHSTWLTFMKNRLEIAKEFLRDDGVIFVQC HHHHHCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE DDNEQAYLKVLMDEIFGRDNFVNSIAVKLKNIAGASGGGEDKRFKKNIEYILIYGKSYEK CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEECCCHHH LEQFKSVYDSRELYSHISFCKENNISWKYTSALLNGGEKKLIATTLDGDGNEIKIFERIN HHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCCCEEEEEEECCCCCEEEEEEECC YDIKSIGQMIKDFKMNEKEIFYHYVNKIFRTTMPQSSIRVRVLEKLKELNLSPYLISIEY CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEE TPKSGRNKGVVYEQFYNGEKLNLFAWLKDVVEIKDKQIFKKELAGTLWDFAFAMTNLTKE CCCCCCCCCEEEHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GDTQFSNAKKPEALLQRIIEISTNENDIVMDFFAGSGTTLAVAHKMKRKWIGIEQMDYIE CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEHHHHHHHHHHCCCHHHHHHH TITKERLKKVIEGEQGGISKAINWQGGGNFVYAELMPLNAIYKEKIQNLNDEKELDNIYQ HHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHH ELKTKAFLDYRVDINEILKDKEFENLDLESKKEILKLVLDSNMDYLLYGDIKDEDYALSK HHHHHHHHEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH EIIKLNKIFYGDENV HHHHHHHEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]