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The map label for this gene is racR [H]

Identifier: 57238133

GI number: 57238133

Start: 1312372

End: 1313043

Strand: Direct

Name: racR [H]

Synonym: CJE1397

Alternate gene names: 57238133

Gene position: 1312372-1313043 (Clockwise)

Preceding gene: 57238131

Following gene: 57238134

Centisome position: 73.82

GC content: 32.44

Gene sequence:

>672_bases
ATGATTAATGTGTTGATGATAGAAGATGATCCTGACTTTGCACAATTATTATCTGAATATTTAGCGCAATTTAATATTAA
AATCACAAATTTTGAAAATCCTAAAAGTGCTTTAAATGTGGGTATTCAAGGCTATGATTGTCTGATTTTAGATTTAACTT
TACCTGGAATTGATGGTCTTGAAGTTTGTAGAGAAATCCGACAAAAAAGCAATATTCCTATTATCATCTCATCGGCTAGA
GGTGACTTAAGCGATAAAGTTGTGGGGCTTCAAATCGGTGCTGATGATTATCTACCAAAGCCTTACGATCCAAAAGAAAT
GTATGCAAGGATTATGAGTCTTATTCGTCGCACAAAAAGAGTTGAACACACTAATAATGAAAATATTAACTCTGCTTTCA
AAATTGATGAAAGAAGACATGAGATCACCTATGAAGATAAGGTTTTAACACTTACTCCTGCTGAATTTGAAATTTTAGAA
TACCTTATCCAACAACACGGATATAGTGTTTCAAGAGAACAGCTTGTAAGTCGCTGTAAAAATCTAAAAGATAAAGATTC
TAAAAGCCTTGATGTTATCATCGGTCGCTTAAGGGTAAAAATAGGAGATAGTTCAAAATCTCCAAAACATATTTTTTCTG
TTAGAGGTATAGGATATAAACTGATAGGATGA

Upstream 100 bases:

>100_bases
AATATAATTTTAGCAAAAATAAAATCAATAATTTATCAAATTTTAAATAAAATTATGTAAAGATTTTAAAGACTACATAA
AAATTTACAAGGACACTAGA

Downstream 100 bases:

>100_bases
CAAAAAATTATTCTATTCATACCAAACTGATTATTTTATTTATTGTTACTTTTTTCTTGGTTTGTGTGCTTTTTATCGTT
CTTTTAAAAATAGAAGGGAA

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQGYDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSAR
GDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIGYKLIG

Sequences:

>Translated_223_residues
MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQGYDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSAR
GDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIGYKLIG
>Mature_223_residues
MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQGYDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSAR
GDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIGYKLIG

Specific function: Part of the two-component regulatory system senX3/regX3. Once phosphorylated by senX3, activates the expression of several operons/genes involved in phosphate assimilation and metabolism, such as pstSCAB, phnDCE, and phoA [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788394, Length=220, Percent_Identity=37.2727272727273, Blast_Score=144, Evalue=3e-36,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=33.0396475770925, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1786784, Length=223, Percent_Identity=31.390134529148, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=33.0357142857143, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI2367329, Length=230, Percent_Identity=33.0434782608696, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI87082012, Length=225, Percent_Identity=29.7777777777778, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=31.6964285714286, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1789402, Length=223, Percent_Identity=33.6322869955157, Blast_Score=113, Evalue=9e-27,
Organism=Escherichia coli, GI1790552, Length=230, Percent_Identity=34.3478260869565, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1786599, Length=225, Percent_Identity=30.6666666666667, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787375, Length=230, Percent_Identity=33.4782608695652, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787229, Length=234, Percent_Identity=27.7777777777778, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1790863, Length=187, Percent_Identity=29.4117647058824, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=27.2727272727273, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1790299, Length=130, Percent_Identity=33.0769230769231, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25399; Mature: 25399

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQGYDCLILDLTLPGIDGL
CEEEEEEECCCCHHHHHHHHHHHHEEEEECCCCCHHHHHCCCCCCEEEEEEEECCCCCHH
EVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRTKR
HHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
VEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILEYLIQQHGYSVSREQLVSRCK
HCCCCCCCCCHHEEECCHHCCCEECCEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHH
NLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIGYKLIG
CCCCCCCCCHHHEEEEEEEEECCCCCCCHHEEEECCCCEEECC
>Mature Secondary Structure
MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQGYDCLILDLTLPGIDGL
CEEEEEEECCCCHHHHHHHHHHHHEEEEECCCCCHHHHHCCCCCCEEEEEEEECCCCCHH
EVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRTKR
HHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
VEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILEYLIQQHGYSVSREQLVSRCK
HCCCCCCCCCHHEEECCHHCCCEECCEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHH
NLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIGYKLIG
CCCCCCCCCHHHEEEEEEEEECCCCCCCHHEEEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA