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The map label for this gene is xerD [C]

Identifier: 57237839

GI number: 57237839

Start: 1021914

End: 1022585

Strand: Reverse

Name: xerD [C]

Synonym: CJE1094

Alternate gene names: 57237839

Gene position: 1022585-1021914 (Counterclockwise)

Preceding gene: 57237840

Following gene: 57237834

Centisome position: 57.52

GC content: 26.49

Gene sequence:

>672_bases
TTGAGAGCATTAACTAGCTTTTTTTCTTTTATAAGCGATAATAATGATGAATTGTTTATTTTTTCCTTTGATATGAAGAA
AATTAGATTTAGAACAGAAAAATCAGAAGAAAAATTAAATTATCTTAATGAAAATGAAATTATAAGGCTAAATAATGTTT
TAGAGAAAGAAAAAGCAAAAAAAGAAGTTTACAATAGTTTTAGAAACTCTTTACTGATAAAACTTATGCTTTATGGAGGA
CTTAGAATTTCTGAAGCTTTAAATGTAAAACTTTGTGATTTTGAAGAGGTTGATGATGAAATATTAAAAATATCCATAAT
AGGCAAGGGCGGTAAAGAACAATTTGCATTTATTAAAAAAGAAGAAGTAGATGATGAGCTTGAATATTTTAAAGAAAATA
TCCAAGATAGTGATTACATAATGCAAACTAGCACAGGAAAACATTTAAACAGAAGTAATGCTTTTTTGATTGTAAATAAT
ATTTACGCTAAAGCTTTGATCAGCAAAAAAGGACTTCATTTGCTTAGACACACTTTAGCCATGAGATTAACAGCCAAAGG
AACAAACCTTGTGGTCATACAAAAAATTCTAAGACATGCAAATCTAAATACTACTACTATATATGCCAAAGCAACAAATG
ATACAATAAAAACTGCGTTATTGAATAATTAA

Upstream 100 bases:

>100_bases
TAAACGATATAAAAACGACTTTTTTAGTCAATTTTCTTAATTATTTAGAAAATAATTCAAAAAATGGCAATAAACTATCA
AAAAAACAAAAATAACTTAT

Downstream 100 bases:

>100_bases
TTTTTCTAAAATTAATTATTTACATAGACTTCTTTTTGAAGTCTATGCTGTGAATCTTTCTAATAAAAGTTTAGGTTCTC
CGCCAAGTATTTTGATGAAA

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRALTSFFSFISDNNDELFIFSFDMKKIRFRTEKSEEKLNYLNENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGG
LRISEALNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNN
IYAKALISKKGLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKTALLNN

Sequences:

>Translated_223_residues
MRALTSFFSFISDNNDELFIFSFDMKKIRFRTEKSEEKLNYLNENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGG
LRISEALNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNN
IYAKALISKKGLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKTALLNN
>Mature_223_residues
MRALTSFFSFISDNNDELFIFSFDMKKIRFRTEKSEEKLNYLNENEIIRLNNVLEKEKAKKEVYNSFRNSLLIKLMLYGG
LRISEALNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNN
IYAKALISKKGLHLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKTALLNN

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 25812; Mature: 25812

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALTSFFSFISDNNDELFIFSFDMKKIRFRTEKSEEKLNYLNENEIIRLNNVLEKEKAK
CHHHHHHHHHHCCCCCEEEEEEECHHHHHHHCCCHHHHHHCCCCCCEEEHHHHHHHHHHH
KEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKK
HHHHHHHHHHHHHHHHHHCCEEECCCCEEEECCHHHCCCEEEEEEEECCCCCHHHHHHHH
EEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIYAKALISKKGLHLLRHTLA
HCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
MRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKTALLNN
HHEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHCCCC
>Mature Secondary Structure
MRALTSFFSFISDNNDELFIFSFDMKKIRFRTEKSEEKLNYLNENEIIRLNNVLEKEKAK
CHHHHHHHHHHCCCCCEEEEEEECHHHHHHHCCCHHHHHHCCCCCCEEEHHHHHHHHHHH
KEVYNSFRNSLLIKLMLYGGLRISEALNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKK
HHHHHHHHHHHHHHHHHHCCEEECCCCEEEECCHHHCCCEEEEEEEECCCCCHHHHHHHH
EEVDDELEYFKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIYAKALISKKGLHLLRHTLA
HCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
MRLTAKGTNLVVIQKILRHANLNTTTIYAKATNDTIKTALLNN
HHEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]