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The map label for this gene is ycaD [H]

Identifier: 57237691

GI number: 57237691

Start: 875464

End: 876651

Strand: Reverse

Name: ycaD [H]

Synonym: CJE0937

Alternate gene names: 57237691

Gene position: 876651-875464 (Counterclockwise)

Preceding gene: 57237692

Following gene: 57237690

Centisome position: 49.31

GC content: 29.71

Gene sequence:

>1188_bases
ATGAGTCCAAAAAAAATTATTAAATCAATGACAGCACTTTTTGCTGGTATGGCATTTTTATTTGCAGGTAATGCCTTGAT
AGTAAGCTCTATAGGTGTTATATTAAAAGAAAACGGAGAAAGTTCTTTAGCTGTTGGAGTAGTAAGTTCTTGTTTTTTTG
TAGGCGCTCTTATTGGAACCATCAGTGCTCATAAAATTATTTCTCGTATAGGTCATATACGCTCTTTTGGGCTATTTGGT
GCTATTTTTGGAATTTCAGCTATGCTTCATACAGTAAGCGAAAATCTTATTTTTTGGGCTGTTTTAAGATTTTTCATAGG
AATTTGCTACTATGGACTTTTAATGGTCATAGAATCATGGCTTAATGAAAAAAGCAAAAATGCCATTCGATCTAGAATTT
TAGGTTTTTATGAAATTGTTTTTTATCTTGCGTTTGGTATTGGAGTTTTAATCATAGCGTTAAATTTAAGCAAACATAGT
GTATTTATCCTCAGTGCAACTTTAATTTTACTTTCATCTTTACCTTTAAATCTAATTAAAATCAAAGAACCTGTTTTACC
CGCATCAAGTCCTATTTCTATGCCTAAAATTTTTGATATAGCTCCTTTAGCTATCGTCACAAGCTTTATAGCCGGAATGC
TTATAAATGGCTTTTTTTCTATGGCATCTTTATTTATACTTTTGCAAGGTTTTGATACAAAAGCGGTTTCTTATTTTATA
TTTTGTGGGGTTTTAGGTGGTTTTATTGCACAAACCATCATAGGAACTATTTCAGACAAACTTGGTCGCAAATTTGCCAT
TATCACTTGTGCAAGTATAGGATTTATCACTATGCTTATATTTATCTTTTTTAAACTTCATTTATATATGCAATATTTTT
TAGGAATTACTCTTGGTATAGGAATATTTTGCTTATATGCTTTAGCACTTGCTAGAGCAAATGATGTTTTAGTAAGCAAA
AATAAAGGTGTAGAGTTAGGTCGTGGGGTTCTTTTTTGTTATTCTTTGGGCTCTTTGTTTGGCCCTTTAATTTTAGGTTT
TTTAATGCAATATTTTGAAATCAAAGGTTTTATATGGTTTTATATAGTTTCTTTAGCATTTTTAATTCTTTTTGCTATCA
ATAAACCAAATATTTTAAATAAAAAATTTAAGAAAAAGCCTGGAAATATGGTGATATTTGATGATTAA

Upstream 100 bases:

>100_bases
TTTTTACATCGCCAAGATAAATTAGATATCTTTGCTTATATTTGTGGAATTTCATCCTTGCTAGTTTGTGTGTTTATTTT
TATTTTATATATAAAAAAGT

Downstream 100 bases:

>100_bases
TACTCAACTAGCAAGTCAAATTGCCAATACGCAAAAAAATGATTTAAAAGTAGATAACTCTGCTTCAAAAGATAAAACAA
ATTTAAAAGACAATCCAAAA

Product: major facilitator family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLAVGVVSSCFFVGALIGTISAHKIISRIGHIRSFGLFG
AIFGISAMLHTVSENLIFWAVLRFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
VFILSATLILLSSLPLNLIKIKEPVLPASSPISMPKIFDIAPLAIVTSFIAGMLINGFFSMASLFILLQGFDTKAVSYFI
FCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFITMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSK
NKGVELGRGVLFCYSLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVIFDD

Sequences:

>Translated_395_residues
MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLAVGVVSSCFFVGALIGTISAHKIISRIGHIRSFGLFG
AIFGISAMLHTVSENLIFWAVLRFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
VFILSATLILLSSLPLNLIKIKEPVLPASSPISMPKIFDIAPLAIVTSFIAGMLINGFFSMASLFILLQGFDTKAVSYFI
FCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFITMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSK
NKGVELGRGVLFCYSLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVIFDD
>Mature_394_residues
SPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLAVGVVSSCFFVGALIGTISAHKIISRIGHIRSFGLFGA
IFGISAMLHTVSENLIFWAVLRFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHSV
FILSATLILLSSLPLNLIKIKEPVLPASSPISMPKIFDIAPLAIVTSFIAGMLINGFFSMASLFILLQGFDTKAVSYFIF
CGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFITMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKN
KGVELGRGVLFCYSLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVIFDD

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=360, Percent_Identity=26.9444444444444, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43319; Mature: 43188

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLAVGVVSSCFFVGALIGT
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVLRFFIGICYYGLLMVIESW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHSVFILSATLILLSSLPLNLIK
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCHHHE
IKEPVLPASSPISMPKIFDIAPLAIVTSFIAGMLINGFFSMASLFILLQGFDTKAVSYFI
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFITMLIFIFFKLHLYMQYFLGITLGI
HHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFCLYALALARANDVLVSKNKGVELGRGVLFCYSLGSLFGPLILGFLMQYFEIKGFIWF
HHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIVSLAFLILFAINKPNILNKKFKKKPGNMVIFDD
HHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEECC
>Mature Secondary Structure 
SPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLAVGVVSSCFFVGALIGT
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
ISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVLRFFIGICYYGLLMVIESW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHSVFILSATLILLSSLPLNLIK
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCHHHE
IKEPVLPASSPISMPKIFDIAPLAIVTSFIAGMLINGFFSMASLFILLQGFDTKAVSYFI
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFITMLIFIFFKLHLYMQYFLGITLGI
HHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFCLYALALARANDVLVSKNKGVELGRGVLFCYSLGSLFGPLILGFLMQYFEIKGFIWF
HHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIVSLAFLILFAINKPNILNKKFKKKPGNMVIFDD
HHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA