Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 57237521

GI number: 57237521

Start: 469822

End: 470523

Strand: Direct

Name: yecS [H]

Synonym: CJE0517

Alternate gene names: 57237521

Gene position: 469822-470523 (Clockwise)

Preceding gene: 57237520

Following gene: 57237522

Centisome position: 26.43

GC content: 29.63

Gene sequence:

>702_bases
ATGGATTTTGATTTTATATTAGCTCAAGCTCCCGCTTTTTTAACAGCTGCTTGGCTTACGATAAAACTAAGCTTTTTTGG
AATTATTTTTTCTTTAATAATAGGCTTGTTTTGCATTTTAATGAGTTATTTTAAAATAAAAATTTTAGAAAATATTTGCA
AGCTTTATATAGAGTTTTCAAGAAATACGCCTTTATTAATTCAACTTTTTTTCTTATATTATGCTTTGCCTAAATTTAAT
ATACATTTAGAGCAAATTCCACCGCTCAATTTAATTTGTTTAAGCGTAGAAGAAACTTTAAGACCTTCTTTTGCTTGTGC
TATAGTAGGACTTAGTTTTTTAGGGGGTTCTTATATGGCTGAGAGTTTAAGGGCGGGATTTGAAGCCATAAGAAAACAGC
AGTTTGAAGCAGGACTTTCTTTGGGTTTTTCAAAATTTGGAAATTTGCGTTATGTGATTTTGCCGCAAGCTTTGGCTATT
TCTATGCCAAGTATTAGTGCTAATATTATATTTTTAATCAAAGAAACTTCAGTTGTTAGCATTATTGCCTTGCCAGATTT
GGTAAATTTAATGAAGAGTTTAAATTCCTTAACTTATAAGACAGATGAGCTATTGTTTTTGTTGTTTATGGGATATTTGT
GCATTATTTTGCCTTTGTCTTTTATTTTGCTAAAGTTTGAAAAAAGGTTGCTTTATGCTTGA

Upstream 100 bases:

>100_bases
GCTTAAAATTTCAGAACTTATTGATACAAAAAAAGGTAAAATTGAAATTTTAAATAAAGGTGTGATTATAAAAGAACTTT
GGTAAAATTTAAGGTAGAGA

Downstream 100 bases:

>100_bases
ACTTTTAAATACCGATACGCTTTTAAGACTCTGGCAAGGGCTTTTTGTCACTCTTGAAATTTCATTTATCAGCATTATTA
TTACTTCGATAGGTGGGTTA

Product: His/Glu/Gln/Arg/opine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYFKIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFN
IHLEQIPPLNLICLSVEETLRPSFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILPLSFILLKFEKRLLYA

Sequences:

>Translated_233_residues
MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYFKIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFN
IHLEQIPPLNLICLSVEETLRPSFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILPLSFILLKFEKRLLYA
>Mature_233_residues
MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYFKIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFN
IHLEQIPPLNLICLSVEETLRPSFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILPLSFILLKFEKRLLYA

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=220, Percent_Identity=32.7272727272727, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1787030, Length=233, Percent_Identity=32.1888412017167, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1786873, Length=229, Percent_Identity=25.3275109170306, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787087, Length=225, Percent_Identity=24, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI87082239, Length=169, Percent_Identity=33.1360946745562, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786874, Length=197, Percent_Identity=26.3959390862944, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48994930, Length=169, Percent_Identity=30.1775147928994, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788646, Length=187, Percent_Identity=24.0641711229947, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1788645, Length=171, Percent_Identity=26.9005847953216, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787086, Length=225, Percent_Identity=25.7777777777778, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26390; Mature: 26390

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYFKIKILENICKLYIEFS
CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RNTPLLIQLFFLYYALPKFNIHLEQIPPLNLICLSVEETLRPSFACAIVGLSFLGGSYMA
CCCHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEHHHHHCHHHHHHHHHHHHHCHHHHH
ESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAISMPSISANIIFLIKETSVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHCCCCCCCEEEEEEECCCEEE
IIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILPLSFILLKFEKRLLYA
EHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYFKIKILENICKLYIEFS
CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RNTPLLIQLFFLYYALPKFNIHLEQIPPLNLICLSVEETLRPSFACAIVGLSFLGGSYMA
CCCHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEHHHHHCHHHHHHHHHHHHHCHHHHH
ESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAISMPSISANIIFLIKETSVVS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHCCCCCCCEEEEEEECCCEEE
IIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILPLSFILLKFEKRLLYA
EHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]