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The map label for this gene is dcrA [H]

Identifier: 57237502

GI number: 57237502

Start: 453301

End: 454398

Strand: Reverse

Name: dcrA [H]

Synonym: CJE0498

Alternate gene names: 57237502

Gene position: 454398-453301 (Counterclockwise)

Preceding gene: 57237503

Following gene: 57237496

Centisome position: 25.56

GC content: 30.6

Gene sequence:

>1098_bases
ATGTTTGGAAGTAAAATAAACCATTCTGATCTTCAAAAACTTGAAGAAGAAAATAAAAATCTTACACATAAAATTGAAAA
ATTTCAATCGGAAAATTTAGAATTAAAAAATAAAATTACATCATTAGAACAAGCGGCTTTAGAGTCTAAACTTAAAACAG
ATCTTTTAAATGTTTTATTAACTGGGGTTTTAAAAAATATTACTATTATTCAAGGCGATATGTTAGAAAATGTAAATAAG
GCAGAAGTTATCTCTAGCTATTCTAAAACTTCTCTTGCTGAAATGGATGAACTTAACCATATTGCTAATTCTATCAATGC
CTCTTTGGGAAATATTACAGAATCAGCCAATAAAACAAGAGATGTTGCAGGAACATTGCATAGAAGTGTAGATGAAATTA
CTAATGTAATTAATCTAATTAAAGATGTTTCCGATCAAACCAATCTTTTAGCTCTTAACGCTGCCATAGAAGCTGCACGC
GCAGGTGAACATGGGCGTGGTTTTGCTGTTGTTGCCGATGAAGTAAGAAAACTAGCTGAAAAAACACAAAAAGCAACCAC
AGAAGTTGAAATGAATATCAACCTTCTAAAGCAAAATGCAAATGAAATGTATACTCAAAGTGAGCAAGTTGAAAAAATTT
CTATAGATTCTAATGCTCATATTATGAGTTTTTCCGAAAAATTTACTCACTTAGTAAATGAAGCGCATTCTACTAATTCA
AATGCAGTTGGTATCGCTTCAGAAGCTTTCGTATCTTTAGCAAAACTAGATCATATAGCTTTTAAATTAAATGGTTATAA
AGAAATTTTTTCCAAATCAGGAAAGCAATTAGCCGATCATACATCTTGTCGCTTAGGAAAATGGCTTGCTAGCACAGGAA
AAGAAAGATTTGGGCAAAATAAAAGCTTCTTAAAAATTAACGAGCCACATGAAAAAGTTCATGAAAATATGAATAATGCT
ATAACAATAGCAAATACAGAAGATATTAGCAAAGATATTACTCAACACAGCATAATTAACAAATGCGAAGTTGCTGAAAA
TGCATCGCTTGATCTTTTCAATGTATTTAAAGAAATGCTTGATGAGTCAGATCATTAA

Upstream 100 bases:

>100_bases
TCTTAGCAGCATGGAAATTTCAACTTTAAAAAAAGAAAAGCTTCATGTAAAAGATGAACTTAGCCAATATCTAGCAAATT
ATAAAAAATAAGGCAAAACA

Downstream 100 bases:

>100_bases
AATCCTAGGTTGAACCTTTTTAAGGTTTAACCTAAATAATCTTTAATTTTCCCCACTTTTCCTTTAAAAACCACATATAA
GCAAAATCAAGCAAAGGCGT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQAALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNK
AEVISSYSKTSLAEMDELNHIANSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSNAHIMSFSEKFTHLVNEAHSTNS
NAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQLADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNA
ITIANTEDISKDITQHSIINKCEVAENASLDLFNVFKEMLDESDH

Sequences:

>Translated_365_residues
MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQAALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNK
AEVISSYSKTSLAEMDELNHIANSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSNAHIMSFSEKFTHLVNEAHSTNS
NAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQLADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNA
ITIANTEDISKDITQHSIINKCEVAENASLDLFNVFKEMLDESDH
>Mature_365_residues
MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQAALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNK
AEVISSYSKTSLAEMDELNHIANSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSNAHIMSFSEKFTHLVNEAHSTNS
NAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQLADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNA
ITIANTEDISKDITQHSIINKCEVAENASLDLFNVFKEMLDESDH

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=126, Percent_Identity=44.4444444444444, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI2367378, Length=132, Percent_Identity=37.1212121212121, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789453, Length=120, Percent_Identity=40, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788195, Length=72, Percent_Identity=52.7777777777778, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788194, Length=76, Percent_Identity=50, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 40516; Mature: 40516

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQAALESKLKTDLLNVLL
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIANSINASLGNITESANKTR
HHHHHHHHEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
KTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSNAHIMSFSEKFTHLVNEAHSTNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHCCCC
NAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQLADHTSCRLGKWLASTGKERFGQN
CCCCHHHHHHHHHHHHHHHHHEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
KSFLKINEPHEKVHENMNNAITIANTEDISKDITQHSIINKCEVAENASLDLFNVFKEML
CCEEEECCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DESDH
CCCCC
>Mature Secondary Structure
MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQAALESKLKTDLLNVLL
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIANSINASLGNITESANKTR
HHHHHHHHEEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
KTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSNAHIMSFSEKFTHLVNEAHSTNS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHCCCC
NAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQLADHTSCRLGKWLASTGKERFGQN
CCCCHHHHHHHHHHHHHHHHHEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
KSFLKINEPHEKVHENMNNAITIANTEDISKDITQHSIINKCEVAENASLDLFNVFKEML
CCEEEECCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DESDH
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]