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The map label for this gene is exbD [H]

Identifier: 57237185

GI number: 57237185

Start: 174820

End: 175230

Strand: Direct

Name: exbD [H]

Synonym: CJE0173

Alternate gene names: 57237185

Gene position: 174820-175230 (Clockwise)

Preceding gene: 57237184

Following gene: 57237186

Centisome position: 9.83

GC content: 28.22

Gene sequence:

>411_bases
ATGATAAAAACTGAAATGGCTCACAAAGAAGAGGAGTTAAGTGAGATCAATATAACTCCTTTTATAGATATTATGCTTGT
ATTATTGATTGTTTTTATGGCTGTTACTCCTCTTATCACAAGTTCTATCAAAATAGAATTACCCAAGAGTTCGCAGCAAG
CAGAGGATAAGCTTAAAAATCCCATCATACTTTATTTAAATACTGATAATACTTTGGCTATTAATGATGATAAATTAAGC
CTAGAAAATCTTTCAAGTGCTTTAGATATAAAAACCAAAGGCAATAAAGAAGAAATTATTTATTTTCATATCGATAAAAG
TGTAAAGTATGAAGATATTATGCAAGTAATGCAAAAATTAAAAGAGAATGGCTATGGAAAAATAGCTCTTTCAAGTAAAA
AGATGGATTAG

Upstream 100 bases:

>100_bases
CTTTTTTATAATTATCTTACAAGAAAAAATTTAAAACTTATGCACCATTTAGATGAGCTTGCAAATTTTGTCTATATACT
TTTTCATAGGAGTTATTTTA

Downstream 100 bases:

>100_bases
TATGAAGTCTAGTGTGATTTTTGGGTTTGTGTTAAGTTTGATATTGCATACTTTAGTATTAATGTTTTTCCTTTTTTCTT
TTTATACTCAAGAAAAATCA

Product: biopolymer ExbD/TolR family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIKIELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLS
LENLSSALDIKTKGNKEEIIYFHIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD

Sequences:

>Translated_136_residues
MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIKIELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLS
LENLSSALDIKTKGNKEEIIYFHIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD
>Mature_136_residues
MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIKIELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLS
LENLSSALDIKTKGNKEEIIYFHIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=119, Percent_Identity=42.8571428571429, Blast_Score=110, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15489; Mature: 15489

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIKIELPKSSQQAEDKLKN
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHCCC
PIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYFHIDKSVKYEDIMQVMQKL
CEEEEEECCCEEEECCCCCCHHHHHHHEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHH
KENGYGKIALSSKKMD
HHCCCCEEEECCCCCC
>Mature Secondary Structure
MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIKIELPKSSQQAEDKLKN
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHCCC
PIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYFHIDKSVKYEDIMQVMQKL
CEEEEEECCCEEEECCCCCCHHHHHHHEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHH
KENGYGKIALSSKKMD
HHCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]