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The map label for this gene is ygcF [C]

Identifier: 57237168

GI number: 57237168

Start: 159248

End: 159991

Strand: Reverse

Name: ygcF [C]

Synonym: CJE0156

Alternate gene names: 57237168

Gene position: 159991-159248 (Counterclockwise)

Preceding gene: 57237169

Following gene: 57237167

Centisome position: 9.0

GC content: 26.21

Gene sequence:

>744_bases
TTGCAACTTGTTGAAAGTTTCTTAAGCATTCAAGGAGAAGGCAAATATAATGGAAAATTAGCTATTTTTATGCGTTTTGC
TGGTTGCAATTTCAACTGTTTAGGTTTTAATGTAAAAATATCAAAAAACGATAAAACTCTCATTGGATGTGACACGATAA
GAGCTGTTTTCACAAAAGATTTTAAAGAAAGTTATGAAACTTTAAATGCTAATGAACTTTTAAAAAGAGTGATAAAATTA
AAAAAAGACTTTGATCCTATAGTTGTTATCACAGGTGGAGAGCCATTAATCCATTATGAAAATCCTGAATTTATAGAATT
TATCCAAATGTTATTAAAAAATAAATTCGAAATACACTTTGAAAGCAATGGAAGCATAGAAATTAATTTTGATAGATATC
CTTTTTACAAAGAATGTATTTTTGCTTTAAGCGTTAAACTCCAAAATAGTGGGATAAAAAAAGATAAACGATTAAATTTT
AAAGCTTTAAAAGCATTTAAAAATTACGCAAAAGATAGTTTTTATAAATTTGTTTTAGATGCCAATACTCTTGATAATTC
ATTTTTAGAAATCAATGAAATTCTAAAAGAAGCTCCAAATCAAATTTTTTGTATGCCTATGGGTGAAAATGAGCAAAACC
TTAAAAAAAATGCTCAAAAAATTGCTGAATTTTGTATTAAGAATGGTTATAATTATTCTGATAGAATTCATATTCGTCTT
TGGAACGATAAAGAGGGTGTATGA

Upstream 100 bases:

>100_bases
TATTACAAGAAGTATTAAGAAATAAACCAGAAAAAAATAAATGGAGTGTTGTTGATAATGAAACCTCATCTCGTGCTTTT
TATCAAACTGGAGGTTAATT

Downstream 100 bases:

>100_bases
TTATAAGAAAATTATTTGAATTTGAAAACGCACACATTGTTAGATTTTGTTCTTCTAAGCGTTGCAAAAGTAGCATTCAT
GGACATTCTTACAAAGTTGA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Mycobacteriophage; Radical SAM-Superfamily Protein; 6-Pyruvoyltetrahydropterin 2-Reductase; Radical Sam Domain Protein; Phosphoribosylaminoimidazole-Succinocarboxamide Synthase; Queuosine Biosynthesis Protein QueE; Co PQQ Synthesis Protein Conjectural; 7-Cyano-7-Deazaguanosine Biosynthesis Protein QueE; Radical SAM Family Protein

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKL
KKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNGSIEINFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKNGYNYSDRIHIRL
WNDKEGV

Sequences:

>Translated_247_residues
MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKL
KKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNGSIEINFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKNGYNYSDRIHIRL
WNDKEGV
>Mature_247_residues
MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKL
KKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHFESNGSIEINFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKNGYNYSDRIHIRL
WNDKEGV

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28733; Mature: 28733

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKD
CHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCEEEEHHHHHHHHHHH
FKESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHF
HHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCHHHHHHHHHHCCCEEEEE
ESNGSIEINFDRYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYKFVLD
CCCCEEEEEECCCCHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEE
ANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKNGYNYSDRIHIRL
CCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
WNDKEGV
ECCCCCC
>Mature Secondary Structure
MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKD
CHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCEEEEHHHHHHHHHHH
FKESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKFEIHF
HHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCHHHHHHHHHHCCCEEEEE
ESNGSIEINFDRYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYKFVLD
CCCCEEEEEECCCCHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEE
ANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNAQKIAEFCIKNGYNYSDRIHIRL
CCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
WNDKEGV
ECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA