Click here to switch to the map view.

The map label for this gene is yggU [C]

Identifier: 57235102

GI number: 57235102

Start: 1178229

End: 1178522

Strand: Direct

Name: yggU [C]

Synonym: DET1292

Alternate gene names: 57235102

Gene position: 1178229-1178522 (Clockwise)

Preceding gene: 57233915

Following gene: 57233901

Centisome position: 80.17

GC content: 47.28

Gene sequence:

>294_bases
ATGCCAGCCAAAGAAAGCCCGTTTAGGGTAAATTTAAAAATATTGCCTTCTGCCCAGAGGAATGAGCTGACCGGGTATGA
AAATGGTCTGCTGAAAATCAAGATAGCTGCCCAGCCGGAAAAGGGCAAGGCCAACAAAGCCCTGGTAGACTACCTGAGTG
AGCTGCTTGATACCCCGAAATCAGAAATAGAAATATGCCGCGGGCTTAGCGGCAGAAACAAAGTGGTAGCCTTTTACTCA
CTTAGTCAGGCAGATTTTGAGGCAAAGATTTCGGCAATTTTGCGGGGGTCTTAG

Upstream 100 bases:

>100_bases
TGCACTTATTAAGCAGCCGGCCTATTTCCCCTGCCAGAAGAGTTAGTTTATAATCTGGGTTATCAATCATAGTATTATAT
TACCTTTTAGAGGGTTTAAT

Downstream 100 bases:

>100_bases
CGTTTACCTTCACCACCACTACTTCGGCGGCCTTTTTCCGGGATATCCGGCTGTTTTTAACAGGCAAATCTATAATAAAC
CGCGTTCCCTGGCCCAGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MPAKESPFRVNLKILPSAQRNELTGYENGLLKIKIAAQPEKGKANKALVDYLSELLDTPKSEIEICRGLSGRNKVVAFYS
LSQADFEAKISAILRGS

Sequences:

>Translated_97_residues
MPAKESPFRVNLKILPSAQRNELTGYENGLLKIKIAAQPEKGKANKALVDYLSELLDTPKSEIEICRGLSGRNKVVAFYS
LSQADFEAKISAILRGS
>Mature_96_residues
PAKESPFRVNLKILPSAQRNELTGYENGLLKIKIAAQPEKGKANKALVDYLSELLDTPKSEIEICRGLSGRNKVVAFYSL
SQADFEAKISAILRGS

Specific function: Unknown

COG id: COG1872

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0235 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1292_DEHE1 (Q3Z6Z5)

Other databases:

- EMBL:   CP000027
- RefSeq:   YP_182004.1
- ProteinModelPortal:   Q3Z6Z5
- SMR:   Q3Z6Z5
- STRING:   Q3Z6Z5
- GeneID:   3230574
- GenomeReviews:   CP000027_GR
- KEGG:   det:DET1292
- TIGR:   DET1292
- eggNOG:   NOG81117
- HOGENOM:   HBG072660
- OMA:   DGKANDE
- ProtClustDB:   CLSK837642
- BioCyc:   DETH243164:DET_1292-MONOMER
- HAMAP:   MF_00634
- InterPro:   IPR003746
- Gene3D:   G3DSA:3.30.1200.10

Pfam domain/function: PF02594 DUF167; SSF69786 DUF167

EC number: NA

Molecular weight: Translated: 10650; Mature: 10519

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAKESPFRVNLKILPSAQRNELTGYENGLLKIKIAAQPEKGKANKALVDYLSELLDTPK
CCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCH
SEIEICRGLSGRNKVVAFYSLSQADFEAKISAILRGS
HHHHHHHCCCCCCCEEEEEECCCCCHHHHHHEEECCC
>Mature Secondary Structure 
PAKESPFRVNLKILPSAQRNELTGYENGLLKIKIAAQPEKGKANKALVDYLSELLDTPK
CCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCH
SEIEICRGLSGRNKVVAFYSLSQADFEAKISAILRGS
HHHHHHHCCCCCCCEEEEEECCCCCHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA