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The map label for this gene is xerD [C]

Identifier: 57235096

GI number: 57235096

Start: 82185

End: 82475

Strand: Direct

Name: xerD [C]

Synonym: DET0084

Alternate gene names: 57235096

Gene position: 82185-82475 (Clockwise)

Preceding gene: 57233554

Following gene: 57233548

Centisome position: 5.59

GC content: 43.3

Gene sequence:

>291_bases
ATGTTACTAACCACACCGATAAAGAGCATGGCCAGTCCTATAACCACGCCACCACTCACCACAAACATTTGCTATAGAGC
TAATATCATCGATGCTAAACCGGGACCGCATACGTTTCGTCATACAGCTGCTATTAATTATCTACGTAATGGGGGAGATG
AGTTTACCTTGCAGATAATGCTCGGGCATACTACCCTTGCCATGACCAGGCGTTATACTAGCACTCTTGGAACTGAAGAT
ATGATGAGAGTGCATAAAAAAGTAAGCCCGGTTGATAACCTAAAGTTGTAA

Upstream 100 bases:

>100_bases
AAGTCATCGTGTAGCTGTTTTCGGGGGTAAGGTCAATTTCCATACAAGTATATAAAAGGTATTTATATTTACTTAGAATA
TCTTCATAACAGAACCCACA

Downstream 100 bases:

>100_bases
TAAAACTAGTGGTATAATAATACAAGAGTTAGATTACAGATTTAGGAATAAAGGGGTGAGCATGTGCTAAAGGTAATAGT
ATCTGGTATATGTATTTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MLLTTPIKSMASPITTPPLTTNICYRANIIDAKPGPHTFRHTAAINYLRNGGDEFTLQIMLGHTTLAMTRRYTSTLGTED
MMRVHKKVSPVDNLKL

Sequences:

>Translated_96_residues
MLLTTPIKSMASPITTPPLTTNICYRANIIDAKPGPHTFRHTAAINYLRNGGDEFTLQIMLGHTTLAMTRRYTSTLGTED
MMRVHKKVSPVDNLKL
>Mature_96_residues
MLLTTPIKSMASPITTPPLTTNICYRANIIDAKPGPHTFRHTAAINYLRNGGDEFTLQIMLGHTTLAMTRRYTSTLGTED
MMRVHKKVSPVDNLKL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10714; Mature: 10714

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLTTPIKSMASPITTPPLTTNICYRANIIDAKPGPHTFRHTAAINYLRNGGDEFTLQIM
CEECCCHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEE
LGHTTLAMTRRYTSTLGTEDMMRVHKKVSPVDNLKL
ECCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLLTTPIKSMASPITTPPLTTNICYRANIIDAKPGPHTFRHTAAINYLRNGGDEFTLQIM
CEECCCHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEE
LGHTTLAMTRRYTSTLGTEDMMRVHKKVSPVDNLKL
ECCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA