Click here to switch to the map view.

The map label for this gene is xerD [H]

Identifier: 57234987

GI number: 57234987

Start: 151916

End: 152620

Strand: Direct

Name: xerD [H]

Synonym: DET0157

Alternate gene names: 57234987

Gene position: 151916-152620 (Clockwise)

Preceding gene: 57234990

Following gene: 57234985

Centisome position: 10.34

GC content: 52.2

Gene sequence:

>705_bases
ATGAATAAGGTCTACCTCGACTATCAGGAGATTGAGCGCATGATCGAAGCTGCCGAAAACCTCCGCGACCGGCTTCTCTT
ACTACTCCTCGCCCATCTCGGGTGCCGTATCAGCGAAGCCTTGTCGATAAGCGTCGATGATGTTGATTTGGCGAATGGCA
CGGTTACCATCAAGCATCTTAAAAGCCGTCTAAAGTTGAAATGCCCAAATTGCCAGGCGGGTCTCGGGTTAACTTCGGTT
TACTGCCCGAAATGCGGTGAAAAAGTCGAATCGGCCCTTAAGGAGTTGAAGGATTTCCGAAGACAGCGGATTCTACCGGT
AGATAAAGCTTTGCTAGTACACCTCCGGGACTATATCACCCGGGGTGGCCCGGTTATTCGAAACGGTAAACGCCTGCTGT
TTGGCGTGAATCGCCACCGCGCCTGGCAGATCATTAAGACGTTGGGTGAAAAAGCCGGCTTGCCGCGGATAATAAACACT
GAGACCGGTAAGGTTCACAATATTTCGCCTCATAAACTCCGTGATGCTTTCGCCGTGCACGCGGTGAAACACGACGACAC
GGGAGACGGGCTCAGGATGCTGCAGGAGCATCTTGGCCATCAGTCCTTTAATACCACGGCCAAATACCGCAAGGTGGCCG
GCGAAGAGCATCGGAAGTGGTACGACGATCTCTGGAAGAGCGATGGTAATTCAGCTAAGACCTAA

Upstream 100 bases:

>100_bases
TCGGTTGAAGCGCGAACCGCGGCTCTCAAAATCCTAGCGCGACTGATCGTCGCCCGCCGCCTGAAAACCGCATCTTCCAA
TCAATCGGAGGATAAATCTC

Downstream 100 bases:

>100_bases
GAAGGGTGGTTTCCTCCGGCCTTTCGGCTGCGGCTGGTTTATCAGGGAATACCTAATGGGCAATGCGCCTTTCGGATCTC
CTGTCATTAATCCTACAATC

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNKVYLDYQEIERMIEAAENLRDRLLLLLLAHLGCRISEALSISVDDVDLANGTVTIKHLKSRLKLKCPNCQAGLGLTSV
YCPKCGEKVESALKELKDFRRQRILPVDKALLVHLRDYITRGGPVIRNGKRLLFGVNRHRAWQIIKTLGEKAGLPRIINT
ETGKVHNISPHKLRDAFAVHAVKHDDTGDGLRMLQEHLGHQSFNTTAKYRKVAGEEHRKWYDDLWKSDGNSAKT

Sequences:

>Translated_234_residues
MNKVYLDYQEIERMIEAAENLRDRLLLLLLAHLGCRISEALSISVDDVDLANGTVTIKHLKSRLKLKCPNCQAGLGLTSV
YCPKCGEKVESALKELKDFRRQRILPVDKALLVHLRDYITRGGPVIRNGKRLLFGVNRHRAWQIIKTLGEKAGLPRIINT
ETGKVHNISPHKLRDAFAVHAVKHDDTGDGLRMLQEHLGHQSFNTTAKYRKVAGEEHRKWYDDLWKSDGNSAKT
>Mature_234_residues
MNKVYLDYQEIERMIEAAENLRDRLLLLLLAHLGCRISEALSISVDDVDLANGTVTIKHLKSRLKLKCPNCQAGLGLTSV
YCPKCGEKVESALKELKDFRRQRILPVDKALLVHLRDYITRGGPVIRNGKRLLFGVNRHRAWQIIKTLGEKAGLPRIINT
ETGKVHNISPHKLRDAFAVHAVKHDDTGDGLRMLQEHLGHQSFNTTAKYRKVAGEEHRKWYDDLWKSDGNSAKT

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 26576; Mature: 26576

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVYLDYQEIERMIEAAENLRDRLLLLLLAHLGCRISEALSISVDDVDLANGTVTIKHL
CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEECCCCEECCCCEEEHHHH
KSRLKLKCPNCQAGLGLTSVYCPKCGEKVESALKELKDFRRQRILPVDKALLVHLRDYIT
HHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RGGPVIRNGKRLLFGVNRHRAWQIIKTLGEKAGLPRIINTETGKVHNISPHKLRDAFAVH
CCCCEEECCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCCCCCEECCCHHHHHHHHHHH
AVKHDDTGDGLRMLQEHLGHQSFNTTAKYRKVAGEEHRKWYDDLWKSDGNSAKT
HHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNKVYLDYQEIERMIEAAENLRDRLLLLLLAHLGCRISEALSISVDDVDLANGTVTIKHL
CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEECCCCEECCCCEEEHHHH
KSRLKLKCPNCQAGLGLTSVYCPKCGEKVESALKELKDFRRQRILPVDKALLVHLRDYIT
HHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RGGPVIRNGKRLLFGVNRHRAWQIIKTLGEKAGLPRIINTETGKVHNISPHKLRDAFAVH
CCCCEEECCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCCCCCEECCCHHHHHHHHHHH
AVKHDDTGDGLRMLQEHLGHQSFNTTAKYRKVAGEEHRKWYDDLWKSDGNSAKT
HHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12381787 [H]