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The map label for this gene is nusB

Identifier: 57233932

GI number: 57233932

Start: 1164053

End: 1164484

Strand: Direct

Name: nusB

Synonym: DET1278

Alternate gene names: 57233932

Gene position: 1164053-1164484 (Clockwise)

Preceding gene: 57233933

Following gene: 57233931

Centisome position: 79.2

GC content: 47.22

Gene sequence:

>432_bases
GTGACAACCAGCAGACGCAAAGCACGTGAAATAGTACTTCAAGCCCTGTACGAACAAGATTTGGCAGGGCATAATGCCGA
AGATGTTTTAAAACGCCTTTTGACCGAAACACCCCAGACCGAGGAAAACGCCGAGTTTATTTTCAGGCTGACCAATGCCA
TAGTCAAGCATAAGGACCTGCTGGATGAAAATATCCGCCAGTTTGCTTCTGCCTGGCCGGTGGAGCAGCTTTCCTATATT
GACCGGAACGTACTTCGTCTGGCCATTTTTGAAATAATCCACGAAAATGATGTACCCATTAAAGTAGCTATTAACGAAGC
AGTTGAGCTTGCCAAATCATTTGGGGGCAACTCGTCTGCCAGATTTATAAACGGGGTTCTAAGTTCTGTCAGCAAAGCGC
TGGCGGACACAGCAAAGCAACGGGAGGAGTGA

Upstream 100 bases:

>100_bases
CCGCTTGTGCATTATACTTGGCGAAAGAAGATGCCAAATACATTACCGGACAGGTAATCAGCCTGGACGGCGGTATGTCT
ATAATATAAGAGAGTAAAGA

Downstream 100 bases:

>100_bases
AGGAGTGGCAACGGTTTTTGAAAGAGTAAAAAAAGTTAGTGTTGAGCAGCTGGGCGCTGAAGAAAAAGATGTAGTGCCTG
CTGCCAGTTTTGCAGATGAT

Product: N utilization substance protein B

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTETPQTEENAEFIFRLTNAIVKHKDLLDENIRQFASAWPVEQLSYI
DRNVLRLAIFEIIHENDVPIKVAINEAVELAKSFGGNSSARFINGVLSSVSKALADTAKQREE

Sequences:

>Translated_143_residues
MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTETPQTEENAEFIFRLTNAIVKHKDLLDENIRQFASAWPVEQLSYI
DRNVLRLAIFEIIHENDVPIKVAINEAVELAKSFGGNSSARFINGVLSSVSKALADTAKQREE
>Mature_142_residues
TTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTETPQTEENAEFIFRLTNAIVKHKDLLDENIRQFASAWPVEQLSYID
RNVLRLAIFEIIHENDVPIKVAINEAVELAKSFGGNSSARFINGVLSSVSKALADTAKQREE

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=125, Percent_Identity=35.2, Blast_Score=79, Evalue=8e-17,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_DEHE1 (Q3Z709)

Other databases:

- EMBL:   CP000027
- RefSeq:   YP_181990.1
- HSSP:   Q9X286
- ProteinModelPortal:   Q3Z709
- SMR:   Q3Z709
- STRING:   Q3Z709
- GeneID:   3229397
- GenomeReviews:   CP000027_GR
- KEGG:   det:DET1278
- NMPDR:   fig|243164.3.peg.1270
- TIGR:   DET1278
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   SHNDIAD
- PhylomeDB:   Q3Z709
- ProtClustDB:   CLSK836998
- BioCyc:   DETH243164:DET_1278-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16163; Mature: 16032

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTETPQTEENAEFIFRLTNAIVKHKDL
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPIKVAINEAVELAKSFGGNSSA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCHH
RFINGVLSSVSKALADTAKQREE
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTETPQTEENAEFIFRLTNAIVKHKDL
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPIKVAINEAVELAKSFGGNSSA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCHH
RFINGVLSSVSKALADTAKQREE
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA