Click here to switch to the map view.

The map label for this gene is ybeY [C]

Identifier: 57233865

GI number: 57233865

Start: 1238753

End: 1239271

Strand: Direct

Name: ybeY [C]

Synonym: DET1370

Alternate gene names: 57233865

Gene position: 1238753-1239271 (Clockwise)

Preceding gene: 57233875

Following gene: 57233864

Centisome position: 84.28

GC content: 46.63

Gene sequence:

>519_bases
GTGCCGCCTTTCCGGGCTGTGATATTATTTAGGCATATGGAAATAAACGTTATAGTCAAACCGCCTTTTAAAAAACTGGT
GTCCACCCCATTTCTTAAAAAGATAGCTTCCAAAACCCTTAAAGCCCAGGCCGCAGACCCGAATTCGGAACTGGGTATAG
TTATTACCGGTCAGGAAGAAATAAAAGACTTAAACTTAAAATACCGGGGGCTTGACGAGCCTACAGATGTGCTTTCGTTT
TATATGCTGGAGGAAAACCCCGAAAACCTGACCGCAGCGGATGATTTTCCTACCCCGCCTGACGAAAACATCCATCTGGG
AGAGGTAATAATCTCTTACCCCCAGGCAGAGCTTCAGGCAACTGCCGCCAGTCACAGCGTGAGCCATGAAATAGCCTTTT
TACTGATTCATGGGGTGCTTCACCTGCTGGGGTATGACCATCACGAAGTTGTGGCCGAAGCAGTTATGAAGTCACACCAG
GATATAGCCATGAAACATATACGGGAGATACTGGAATGA

Upstream 100 bases:

>100_bases
ATATTTACTCCGTAATTATTTACAAACTAAAGAAGCATTATAGCACGTATTCGCTTCCAACAAAAGCCGCTTCGCCGCAG
ACACCGCTTAAAGCCTGATT

Downstream 100 bases:

>100_bases
GAGTACTGGGTTTATCCGGCAGCCCCCGCCTTGGCGGCAACAGTGATACCCTGCTGCACGAAGCTATCAGAGGTGCCAAA
GACAAAGGAGCGGAAACCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MPPFRAVILFRHMEINVIVKPPFKKLVSTPFLKKIASKTLKAQAADPNSELGIVITGQEEIKDLNLKYRGLDEPTDVLSF
YMLEENPENLTAADDFPTPPDENIHLGEVIISYPQAELQATAASHSVSHEIAFLLIHGVLHLLGYDHHEVVAEAVMKSHQ
DIAMKHIREILE

Sequences:

>Translated_172_residues
MPPFRAVILFRHMEINVIVKPPFKKLVSTPFLKKIASKTLKAQAADPNSELGIVITGQEEIKDLNLKYRGLDEPTDVLSF
YMLEENPENLTAADDFPTPPDENIHLGEVIISYPQAELQATAASHSVSHEIAFLLIHGVLHLLGYDHHEVVAEAVMKSHQ
DIAMKHIREILE
>Mature_171_residues
PPFRAVILFRHMEINVIVKPPFKKLVSTPFLKKIASKTLKAQAADPNSELGIVITGQEEIKDLNLKYRGLDEPTDVLSFY
MLEENPENLTAADDFPTPPDENIHLGEVIISYPQAELQATAASHSVSHEIAFLLIHGVLHLLGYDHHEVVAEAVMKSHQD
IAMKHIREILE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_DEHE1 (Q3Z6R8)

Other databases:

- EMBL:   CP000027
- RefSeq:   YP_182081.1
- ProteinModelPortal:   Q3Z6R8
- SMR:   Q3Z6R8
- STRING:   Q3Z6R8
- GeneID:   3229329
- GenomeReviews:   CP000027_GR
- KEGG:   det:DET1370
- NMPDR:   fig|243164.3.peg.1325
- TIGR:   DET1370
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   SHEIAFL
- ProtClustDB:   CLSK836941
- BioCyc:   DETH243164:DET_1370-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 19293; Mature: 19161

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPFRAVILFRHMEINVIVKPPFKKLVSTPFLKKIASKTLKAQAADPNSELGIVITGQEE
CCCHHHEEEEEEEEEEEEECCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEEECHHH
IKDLNLKYRGLDEPTDVLSFYMLEENPENLTAADDFPTPPDENIHLGEVIISYPQAELQA
HHHCCCEECCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEHHHHHHHCCHHHHHH
TAASHSVSHEIAFLLIHGVLHLLGYDHHEVVAEAVMKSHQDIAMKHIREILE
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
PPFRAVILFRHMEINVIVKPPFKKLVSTPFLKKIASKTLKAQAADPNSELGIVITGQEE
CCHHHEEEEEEEEEEEEECCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEEECHHH
IKDLNLKYRGLDEPTDVLSFYMLEENPENLTAADDFPTPPDENIHLGEVIISYPQAELQA
HHHCCCEECCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEHHHHHHHCCHHHHHH
TAASHSVSHEIAFLLIHGVLHLLGYDHHEVVAEAVMKSHQDIAMKHIREILE
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA