Click here to switch to the map view.

The map label for this gene is sigV [H]

Identifier: 56965809

GI number: 56965809

Start: 4225209

End: 4225748

Strand: Direct

Name: sigV [H]

Synonym: ABC4051

Alternate gene names: 56965809

Gene position: 4225209-4225748 (Clockwise)

Preceding gene: 56965808

Following gene: 56965810

Centisome position: 98.17

GC content: 42.41

Gene sequence:

>540_bases
ATGACAGACGAAGAGCTCGCACGAAAAGCAATTAGCGGCAACGTAGCCGCTTTTGAATCTTTGTTAATGGCTCATTATGA
AAAGCTTTACTATACCGCCATGAAATACACCAACCAACATAATGATGCCCTTGATGCCATTCAAGAGGCTAGCTGCAAAG
CATACTTATCGATTCACAAATTGAACCATCCACAATATTTCATGACGTGGGTGACAAAAATTCTCATTCGTGAATGCTAC
CAACTGCTGCAAAAACAAAAGAAAATGATCCCCTTTGAAGACGCGGACCTATTTAAAAAGTTAGAAGGCCATCAAGAAGC
ACCCGCACATGCTTCAACGTTATCAGCCGCGCTTCTCGATCTCGATCAAAAATACCAGTCGGCCATTATTCTGCATTATT
ACCACGACCTCCCTATCAAAGAAGTCGCCGAGATTATGAAAAAACCACAATCAACCATCAAATCCTACCTGCTTCGAGGG
AGAAAACGGATGAAAGCCTATTTTGAGAGGAGCGAACGTTTGCATGGAACCATCATTTGA

Upstream 100 bases:

>100_bases
TAGGCCCTCTCTTATTTCTAGCTGTCACACAAATTTTTTTTGAAAGTGCAACCTTTTGATCACAAAACGCCCTCTAAGTA
GTAGAAAGGAGGCACGGCCT

Downstream 100 bases:

>100_bases
TAAACAGATCAAACAAGAAGTCGAGCATGCCATTCGCCAAGGAATTTTGAAGGCAGAAAAAGCGAAAAAGGCAAGTTGGA
AACCGTGGGCTTACAGCTTT

Product: DNA-directed RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MTDEELARKAISGNVAAFESLLMAHYEKLYYTAMKYTNQHNDALDAIQEASCKAYLSIHKLNHPQYFMTWVTKILIRECY
QLLQKQKKMIPFEDADLFKKLEGHQEAPAHASTLSAALLDLDQKYQSAIILHYYHDLPIKEVAEIMKKPQSTIKSYLLRG
RKRMKAYFERSERLHGTII

Sequences:

>Translated_179_residues
MTDEELARKAISGNVAAFESLLMAHYEKLYYTAMKYTNQHNDALDAIQEASCKAYLSIHKLNHPQYFMTWVTKILIRECY
QLLQKQKKMIPFEDADLFKKLEGHQEAPAHASTLSAALLDLDQKYQSAIILHYYHDLPIKEVAEIMKKPQSTIKSYLLRG
RKRMKAYFERSERLHGTII
>Mature_178_residues
TDEELARKAISGNVAAFESLLMAHYEKLYYTAMKYTNQHNDALDAIQEASCKAYLSIHKLNHPQYFMTWVTKILIRECYQ
LLQKQKKMIPFEDADLFKKLEGHQEAPAHASTLSAALLDLDQKYQSAIILHYYHDLPIKEVAEIMKKPQSTIKSYLLRGR
KRMKAYFERSERLHGTII

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20883; Mature: 20752

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDEELARKAISGNVAAFESLLMAHYEKLYYTAMKYTNQHNDALDAIQEASCKAYLSIHK
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LNHPQYFMTWVTKILIRECYQLLQKQKKMIPFEDADLFKKLEGHQEAPAHASTLSAALLD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
LDQKYQSAIILHYYHDLPIKEVAEIMKKPQSTIKSYLLRGRKRMKAYFERSERLHGTII
HHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TDEELARKAISGNVAAFESLLMAHYEKLYYTAMKYTNQHNDALDAIQEASCKAYLSIHK
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LNHPQYFMTWVTKILIRECYQLLQKQKKMIPFEDADLFKKLEGHQEAPAHASTLSAALLD
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
LDQKYQSAIILHYYHDLPIKEVAEIMKKPQSTIKSYLLRGRKRMKAYFERSERLHGTII
HHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]