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The map label for this gene is yocR [H]

Identifier: 56965763

GI number: 56965763

Start: 4171926

End: 4173257

Strand: Direct

Name: yocR [H]

Synonym: ABC4005

Alternate gene names: 56965763

Gene position: 4171926-4173257 (Clockwise)

Preceding gene: 56965762

Following gene: 56965764

Centisome position: 96.93

GC content: 46.7

Gene sequence:

>1332_bases
ATGAGTGAACAGTGGACATCTAAAATCGGTTTTATACTCGCTTCCGCGGGCGCTGCAATTGGGCTTGGCGCTCTTTGGCG
CTTTCCTTATTTGACGGGGACAAATGGTGGAGGCGCATTCTTTCTCTTATTTATATTATTTACCGTTTTCATTGGCCTGC
CGCTGCTTATTGCCGAGTTTGTCATTGGCCGCGGCGCAAAGCGCGAGGCGGTATCGGCTTACCCGAAGCTTGTTAACAGC
AAAGCGTGGTCTTGGATTGGGCGTTTTGGCGTTGTTGGCTGCTTTTTGCTGATGACGTTTTATGCGGTCGTGGGCGGCTG
GATTTTGCTTTATGCGTTGTTGTCGTTCGGCAATTTTGTCCTTGTAGATGGGCGCGATTACGAGCAATTGTTTATCAGCA
TTACCGCCAGCCCTTGGGCGAGTATACTCGGTCTTGTGTTATTCGTGTTCCTGAATGTCGTCGTGTTGTCTTTCGGCATT
AAAAATGGGATCGAACGGGCCAACAAGTACTTAATGCCACTTTTGTTTTTGTTTTTGCTTATTATTATTTTTCGTGGCCT
CTCCCTTGAAGGCGCGATGGAAGGCGTCCGTTTTTTCCTACAGCCTGACTTTTCAAAAATAACCGCGCCAGGCTTGCTGG
AAGCATTGGGGCAATCGTTTTTCTCGCTGGCAGTTGGTTTCTCTTGTATGGTGACATACAGTTCCTACCTGGGAGAAAAG
CAAAGTTTGCCTGGCTCGGCTGCGTATGTGGCGGCAATGAACGTATTTGTGTCATTATTGGCTGGTCTTGCGATTTTTCC
AATTGTCTTTGCCTACGGCATTGAGCCAGCCTCTGGGCCAGGGCTGTTATTTATTGCGCTGCCTGCGATTTTTGCACAAA
TGCCTTTCGGCGCTTTGTTTTTAAGTTTGTTTCTGTTATTGTTCTTCTTTGCGACCATTACCTCATCTTTAAGTTTGTTG
GAAATTATTATTTCTGCCTTTACCCAAAACAAAGGCTGGAACCGTCGCAATGTCGCGATGGGAAGCGGTGTTGTCGTCAT
TGTCGCGGCGATTCCTTCTGCATTATCGGCAGGGCTTTTAAGCGGGTTTGCTTGGCAAGAGAAAACGGTGTTTGATCTGA
CCGATTTGCTTGTCTCGAATGTCATGCTTCCCGTCGGTTGTTTGCTTATTGCTTTATTCGTTGGCTATAAAATCAAGCGT
GACCTATTGTTTCATCAATTTCAGTTAGCAGCGGGGCCTGTTGGCCGTATAGCTCCATTTTGGCTTTTTCTAATGCGTAC
GCTCGTGCCGGCTACAATTCTTTTGGTGTTTATTGCCCAGTTTTTCTTATAA

Upstream 100 bases:

>100_bases
CGACTCGTCTCAAATCGGTTCTCGGCAAATTCGCTTTTCTGTGGTAAAGTGGAAAACAATACATAATAAGGCAGGTGACT
GCTGCAAAGCCAGCAATCGT

Downstream 100 bases:

>100_bases
TACAATTTTTATGTTTAACAAGCTGTCGGCCTTAGGTATATAAAGGGGAGGAGGAGGATGTCAATGAGCCAAATTAAAAA
AACAGCCAAAGCGCTACCTG

Product: SNF family sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSEQWTSKIGFILASAGAAIGLGALWRFPYLTGTNGGGAFFLLFILFTVFIGLPLLIAEFVIGRGAKREAVSAYPKLVNS
KAWSWIGRFGVVGCFLLMTFYAVVGGWILLYALLSFGNFVLVDGRDYEQLFISITASPWASILGLVLFVFLNVVVLSFGI
KNGIERANKYLMPLLFLFLLIIIFRGLSLEGAMEGVRFFLQPDFSKITAPGLLEALGQSFFSLAVGFSCMVTYSSYLGEK
QSLPGSAAYVAAMNVFVSLLAGLAIFPIVFAYGIEPASGPGLLFIALPAIFAQMPFGALFLSLFLLLFFFATITSSLSLL
EIIISAFTQNKGWNRRNVAMGSGVVVIVAAIPSALSAGLLSGFAWQEKTVFDLTDLLVSNVMLPVGCLLIALFVGYKIKR
DLLFHQFQLAAGPVGRIAPFWLFLMRTLVPATILLVFIAQFFL

Sequences:

>Translated_443_residues
MSEQWTSKIGFILASAGAAIGLGALWRFPYLTGTNGGGAFFLLFILFTVFIGLPLLIAEFVIGRGAKREAVSAYPKLVNS
KAWSWIGRFGVVGCFLLMTFYAVVGGWILLYALLSFGNFVLVDGRDYEQLFISITASPWASILGLVLFVFLNVVVLSFGI
KNGIERANKYLMPLLFLFLLIIIFRGLSLEGAMEGVRFFLQPDFSKITAPGLLEALGQSFFSLAVGFSCMVTYSSYLGEK
QSLPGSAAYVAAMNVFVSLLAGLAIFPIVFAYGIEPASGPGLLFIALPAIFAQMPFGALFLSLFLLLFFFATITSSLSLL
EIIISAFTQNKGWNRRNVAMGSGVVVIVAAIPSALSAGLLSGFAWQEKTVFDLTDLLVSNVMLPVGCLLIALFVGYKIKR
DLLFHQFQLAAGPVGRIAPFWLFLMRTLVPATILLVFIAQFFL
>Mature_442_residues
SEQWTSKIGFILASAGAAIGLGALWRFPYLTGTNGGGAFFLLFILFTVFIGLPLLIAEFVIGRGAKREAVSAYPKLVNSK
AWSWIGRFGVVGCFLLMTFYAVVGGWILLYALLSFGNFVLVDGRDYEQLFISITASPWASILGLVLFVFLNVVVLSFGIK
NGIERANKYLMPLLFLFLLIIIFRGLSLEGAMEGVRFFLQPDFSKITAPGLLEALGQSFFSLAVGFSCMVTYSSYLGEKQ
SLPGSAAYVAAMNVFVSLLAGLAIFPIVFAYGIEPASGPGLLFIALPAIFAQMPFGALFLSLFLLLFFFATITSSLSLLE
IIISAFTQNKGWNRRNVAMGSGVVVIVAAIPSALSAGLLSGFAWQEKTVFDLTDLLVSNVMLPVGCLLIALFVGYKIKRD
LLFHQFQLAAGPVGRIAPFWLFLMRTLVPATILLVFIAQFFL

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=498, Percent_Identity=26.7068273092369, Blast_Score=128, Evalue=8e-30,
Organism=Homo sapiens, GI7657587, Length=388, Percent_Identity=26.0309278350515, Blast_Score=126, Evalue=5e-29,
Organism=Homo sapiens, GI197276623, Length=347, Percent_Identity=29.971181556196, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI54607094, Length=347, Percent_Identity=29.971181556196, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI4507043, Length=386, Percent_Identity=27.2020725388601, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI171184408, Length=371, Percent_Identity=28.5714285714286, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI171184406, Length=371, Percent_Identity=28.5714285714286, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI171184404, Length=371, Percent_Identity=28.5714285714286, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI188528618, Length=380, Percent_Identity=26.5789473684211, Blast_Score=121, Evalue=2e-27,
Organism=Homo sapiens, GI134304856, Length=403, Percent_Identity=26.7990074441687, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI58219014, Length=304, Percent_Identity=29.2763157894737, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI51468073, Length=294, Percent_Identity=28.5714285714286, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI33354281, Length=295, Percent_Identity=27.4576271186441, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI194018524, Length=294, Percent_Identity=29.9319727891156, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI4507041, Length=377, Percent_Identity=25.7294429708223, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI289191351, Length=383, Percent_Identity=24.8041775456919, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI4557046, Length=383, Percent_Identity=24.8041775456919, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI289191377, Length=389, Percent_Identity=24.9357326478149, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI92859670, Length=404, Percent_Identity=23.5148514851485, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI11181770, Length=295, Percent_Identity=28.4745762711864, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI5032097, Length=353, Percent_Identity=26.3456090651558, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI218563756, Length=345, Percent_Identity=26.3768115942029, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI21361693, Length=116, Percent_Identity=37.9310344827586, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI300360519, Length=320, Percent_Identity=26.5625, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI12408638, Length=276, Percent_Identity=27.1739130434783, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI197276625, Length=116, Percent_Identity=38.7931034482759, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI6005715, Length=165, Percent_Identity=32.1212121212121, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI289191353, Length=200, Percent_Identity=25.5, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI55749589, Length=287, Percent_Identity=25.7839721254355, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI25146584, Length=382, Percent_Identity=24.3455497382199, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI133952791, Length=418, Percent_Identity=27.7511961722488, Blast_Score=99, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17554804, Length=471, Percent_Identity=24.8407643312102, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17555248, Length=200, Percent_Identity=27.5, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71998244, Length=329, Percent_Identity=23.4042553191489, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17136952, Length=397, Percent_Identity=24.9370277078086, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI281364394, Length=397, Percent_Identity=24.9370277078086, Blast_Score=125, Evalue=5e-29,
Organism=Drosophila melanogaster, GI28574704, Length=397, Percent_Identity=24.9370277078086, Blast_Score=125, Evalue=5e-29,
Organism=Drosophila melanogaster, GI17136950, Length=397, Percent_Identity=24.9370277078086, Blast_Score=125, Evalue=5e-29,
Organism=Drosophila melanogaster, GI28574702, Length=397, Percent_Identity=24.9370277078086, Blast_Score=125, Evalue=5e-29,
Organism=Drosophila melanogaster, GI24762620, Length=381, Percent_Identity=28.6089238845144, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24639514, Length=505, Percent_Identity=24.3564356435644, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI221329674, Length=504, Percent_Identity=24.4047619047619, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI19921936, Length=389, Percent_Identity=25.9640102827763, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24652942, Length=387, Percent_Identity=24.2894056847545, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI45551088, Length=387, Percent_Identity=24.2894056847545, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24639516, Length=525, Percent_Identity=23.047619047619, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI19921352, Length=388, Percent_Identity=26.0309278350515, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24584353, Length=388, Percent_Identity=26.0309278350515, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24661428, Length=382, Percent_Identity=25.9162303664921, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24582567, Length=476, Percent_Identity=25.2100840336134, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281365034, Length=393, Percent_Identity=24.6819338422392, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24655079, Length=295, Percent_Identity=26.7796610169492, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI281363702, Length=375, Percent_Identity=25.0666666666667, Blast_Score=95, Evalue=8e-20,
Organism=Drosophila melanogaster, GI281364136, Length=393, Percent_Identity=25.6997455470738, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24639853, Length=419, Percent_Identity=26.491646778043, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI45550877, Length=185, Percent_Identity=29.7297297297297, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI45551183, Length=185, Percent_Identity=29.7297297297297, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24654186, Length=168, Percent_Identity=32.1428571428571, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24582569, Length=291, Percent_Identity=25.4295532646048, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48137; Mature: 48006

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQWTSKIGFILASAGAAIGLGALWRFPYLTGTNGGGAFFLLFILFTVFIGLPLLIAEF
CCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VIGRGAKREAVSAYPKLVNSKAWSWIGRFGVVGCFLLMTFYAVVGGWILLYALLSFGNFV
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LVDGRDYEQLFISITASPWASILGLVLFVFLNVVVLSFGIKNGIERANKYLMPLLFLFLL
EECCCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIIFRGLSLEGAMEGVRFFLQPDFSKITAPGLLEALGQSFFSLAVGFSCMVTYSSYLGEK
HHHHCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QSLPGSAAYVAAMNVFVSLLAGLAIFPIVFAYGIEPASGPGLLFIALPAIFAQMPFGALF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHH
LSLFLLLFFFATITSSLSLLEIIISAFTQNKGWNRRNVAMGSGVVVIVAAIPSALSAGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEHHHHHHHHHHHHHH
SGFAWQEKTVFDLTDLLVSNVMLPVGCLLIALFVGYKIKRDLLFHQFQLAAGPVGRIAPF
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
WLFLMRTLVPATILLVFIAQFFL
HHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SEQWTSKIGFILASAGAAIGLGALWRFPYLTGTNGGGAFFLLFILFTVFIGLPLLIAEF
CCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VIGRGAKREAVSAYPKLVNSKAWSWIGRFGVVGCFLLMTFYAVVGGWILLYALLSFGNFV
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LVDGRDYEQLFISITASPWASILGLVLFVFLNVVVLSFGIKNGIERANKYLMPLLFLFLL
EECCCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIIFRGLSLEGAMEGVRFFLQPDFSKITAPGLLEALGQSFFSLAVGFSCMVTYSSYLGEK
HHHHCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QSLPGSAAYVAAMNVFVSLLAGLAIFPIVFAYGIEPASGPGLLFIALPAIFAQMPFGALF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHH
LSLFLLLFFFATITSSLSLLEIIISAFTQNKGWNRRNVAMGSGVVVIVAAIPSALSAGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEHHHHHHHHHHHHHH
SGFAWQEKTVFDLTDLLVSNVMLPVGCLLIALFVGYKIKRDLLFHQFQLAAGPVGRIAPF
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
WLFLMRTLVPATILLVFIAQFFL
HHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]