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The map label for this gene is yhfW [H]

Identifier: 56965704

GI number: 56965704

Start: 4103146

End: 4104663

Strand: Direct

Name: yhfW [H]

Synonym: ABC3946

Alternate gene names: 56965704

Gene position: 4103146-4104663 (Clockwise)

Preceding gene: 56965700

Following gene: 56965706

Centisome position: 95.34

GC content: 46.9

Gene sequence:

>1518_bases
ATGAGTGAACAACAATTAAATTTAGGGTCTGTTTGGCAAAAAGTAGATTTTCCTAACTTCCCCGCTTTACAAGAGGACAT
CGAAGTGGATGTCGCCATTGCTGGCGGCGGTTTGACTGGCATTACGACCGCTTATTTACTAACAGAAGCAGGCAAAAAGG
TCGCTGTACTTGATGCAACTAAAATTGGCGGAGGCACGACTGGGCACACAACCGCAAAGATCACAGCCCAACATGATGTG
ATTTACCACGAATTTTTGAGCCATATTGGCAAAGAACAAACAAAGCTTTATTACAAAGCGCAAGACGAAGCGATAAGCTG
GATGCGCAATCTCGTCAACAACCAAAACATCGAGTGTGATTTTCAAGATGAAGACCACTACCTTTATGCAACAACCCACC
ATGGGGAACATAAACTCAAGCGGGAACTAGAAGCCTATAAACAACTCGGCATTCCAGGAGAGTGGCTCACGTCGCTGCCT
ATTGATTTGGAAATCCGCGCAGCTCTGAGATTAAAAGGTCAAGCACGATTTCATCCGCTCCAATATTTGGCTTACTTATG
CCAAAAAATAACCGAAAAAGGCGGCCTAATTTACGAAAATACTGTTTGTGAAAAAGTCGTTCAAGGCAATGATAAACGCC
CGGCCATTCAAACGAGGGGCGGCGCGAAAGCAACAGCTAAAAAAGTGGTCGCGGCAACACACTTCCCCTTTGCAGATGGA
GGCGGCTTGTACATGACACGCTTGCGGGCAGACCGATCCTATGTCGTTGCTGGCACATACGCAAAACCTTGGCCTGGCGG
CATGTATTTAAGTGTAGACCAAACAAGCCGTTCTCTCCGCAGCGCTACGATAAACGGCGAAGAAATGATTTTGGTTGGCG
GAGAAGGGCATAAAGCAGGACAAGGAATGAATGCGCTCAAACATTACGAGGCAGTTAAACAATTCGCCACCGAGACATTA
GAAGGGTTTACACAAGAAGATCAATGGGCCACACAAGACTTGATTACACTTGACAAGCTCCCTTATATTGGCCAATTGTC
CGCCCTCCAACCGGACGTACTTGTTGCCACTGGGTTCAGGAAATGGGGCATGACCAATTCAGCTGTGGCCGCACATGTTT
TGTGCGATTTAATTGTGGATGGCAACAGCTTATACAGCCAATTATTCAAGCCATCTCGGTTCCATGCCGACCCAAGCATT
CGTTCCTTTTTAAAAGAGAATGCAGACGTGGCTAAACATTTGCTTCGCGGAAAACTACATCAGGATATTGAACATGTTGA
GGAGCTTGAAGCTGGGGAGGGAGCCGTAATTGACAAAGACGGCGAGCGAGTAGGCGCCTATCGCGATAAAGACGGGACAC
TCCACCTCGTCGATACAACCTGTACCCACATGGGCTGTGAAGTAAATTGGAATCACGCAGACAATACGTGGGATTGTCCA
TGCCATGGCTCACGTTTTTCTTATACAGGCGATGTCATTGAAGGGCCAGCCAAAAAACCGCTTGGAAAAAAAGAATAG

Upstream 100 bases:

>100_bases
AAATGGCGAATTTCGCAAAACTAAAAATAGCCCTTTTTCCTCATAAAATCTGGGAAACATGACCATAGTGATAACAGACA
AGAAAATGGAGGACGAAAAG

Downstream 100 bases:

>100_bases
AAGCCATTTAAGGGAGTCCTCCCTTAAATGGCTTTTTACGTTCTTCATCCTTTAGCGGCGATGGAGCATGCTTTCGATCC
GCTTCATTTGCCACTGCAAT

Product: Rieske [2Fe-2S] iron-sulfur protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 504

Protein sequence:

>505_residues
MSEQQLNLGSVWQKVDFPNFPALQEDIEVDVAIAGGGLTGITTAYLLTEAGKKVAVLDATKIGGGTTGHTTAKITAQHDV
IYHEFLSHIGKEQTKLYYKAQDEAISWMRNLVNNQNIECDFQDEDHYLYATTHHGEHKLKRELEAYKQLGIPGEWLTSLP
IDLEIRAALRLKGQARFHPLQYLAYLCQKITEKGGLIYENTVCEKVVQGNDKRPAIQTRGGAKATAKKVVAATHFPFADG
GGLYMTRLRADRSYVVAGTYAKPWPGGMYLSVDQTSRSLRSATINGEEMILVGGEGHKAGQGMNALKHYEAVKQFATETL
EGFTQEDQWATQDLITLDKLPYIGQLSALQPDVLVATGFRKWGMTNSAVAAHVLCDLIVDGNSLYSQLFKPSRFHADPSI
RSFLKENADVAKHLLRGKLHQDIEHVEELEAGEGAVIDKDGERVGAYRDKDGTLHLVDTTCTHMGCEVNWNHADNTWDCP
CHGSRFSYTGDVIEGPAKKPLGKKE

Sequences:

>Translated_505_residues
MSEQQLNLGSVWQKVDFPNFPALQEDIEVDVAIAGGGLTGITTAYLLTEAGKKVAVLDATKIGGGTTGHTTAKITAQHDV
IYHEFLSHIGKEQTKLYYKAQDEAISWMRNLVNNQNIECDFQDEDHYLYATTHHGEHKLKRELEAYKQLGIPGEWLTSLP
IDLEIRAALRLKGQARFHPLQYLAYLCQKITEKGGLIYENTVCEKVVQGNDKRPAIQTRGGAKATAKKVVAATHFPFADG
GGLYMTRLRADRSYVVAGTYAKPWPGGMYLSVDQTSRSLRSATINGEEMILVGGEGHKAGQGMNALKHYEAVKQFATETL
EGFTQEDQWATQDLITLDKLPYIGQLSALQPDVLVATGFRKWGMTNSAVAAHVLCDLIVDGNSLYSQLFKPSRFHADPSI
RSFLKENADVAKHLLRGKLHQDIEHVEELEAGEGAVIDKDGERVGAYRDKDGTLHLVDTTCTHMGCEVNWNHADNTWDCP
CHGSRFSYTGDVIEGPAKKPLGKKE
>Mature_504_residues
SEQQLNLGSVWQKVDFPNFPALQEDIEVDVAIAGGGLTGITTAYLLTEAGKKVAVLDATKIGGGTTGHTTAKITAQHDVI
YHEFLSHIGKEQTKLYYKAQDEAISWMRNLVNNQNIECDFQDEDHYLYATTHHGEHKLKRELEAYKQLGIPGEWLTSLPI
DLEIRAALRLKGQARFHPLQYLAYLCQKITEKGGLIYENTVCEKVVQGNDKRPAIQTRGGAKATAKKVVAATHFPFADGG
GLYMTRLRADRSYVVAGTYAKPWPGGMYLSVDQTSRSLRSATINGEEMILVGGEGHKAGQGMNALKHYEAVKQFATETLE
GFTQEDQWATQDLITLDKLPYIGQLSALQPDVLVATGFRKWGMTNSAVAAHVLCDLIVDGNSLYSQLFKPSRFHADPSIR
SFLKENADVAKHLLRGKLHQDIEHVEELEAGEGAVIDKDGERVGAYRDKDGTLHLVDTTCTHMGCEVNWNHADNTWDCPC
HGSRFSYTGDVIEGPAKKPLGKKE

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=394, Percent_Identity=23.8578680203046, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 55842; Mature: 55710

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQQLNLGSVWQKVDFPNFPALQEDIEVDVAIAGGGLTGITTAYLLTEAGKKVAVLDAT
CCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEE
KIGGGTTGHTTAKITAQHDVIYHEFLSHIGKEQTKLYYKAQDEAISWMRNLVNNQNIECD
ECCCCCCCCEEEEEEEHHHHHHHHHHHHHCCHHHEEEEEEHHHHHHHHHHHHCCCCCEEE
FQDEDHYLYATTHHGEHKLKRELEAYKQLGIPGEWLTSLPIDLEIRAALRLKGQARFHPL
EECCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEEECCCCCCCHH
QYLAYLCQKITEKGGLIYENTVCEKVVQGNDKRPAIQTRGGAKATAKKVVAATHFPFADG
HHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHEECCCCCCC
GGLYMTRLRADRSYVVAGTYAKPWPGGMYLSVDQTSRSLRSATINGEEMILVGGEGHKAG
CCEEEEEEECCCCEEEECCCCCCCCCCEEEEECHHHHHHHHEECCCCEEEEECCCCCCCC
QGMNALKHYEAVKQFATETLEGFTQEDQWATQDLITLDKLPYIGQLSALQPDVLVATGFR
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCH
KWGMTNSAVAAHVLCDLIVDGNSLYSQLFKPSRFHADPSIRSFLKENADVAKHLLRGKLH
HCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
QDIEHVEELEAGEGAVIDKDGERVGAYRDKDGTLHLVDTTCTHMGCEVNWNHADNTWDCP
HHHHHHHHHCCCCCCEECCCCCEECCEECCCCEEEEEECHHHHCCCEEECCCCCCCCCCC
CHGSRFSYTGDVIEGPAKKPLGKKE
CCCCCCEECCCHHCCCCCCCCCCCC
>Mature Secondary Structure 
SEQQLNLGSVWQKVDFPNFPALQEDIEVDVAIAGGGLTGITTAYLLTEAGKKVAVLDAT
CCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEE
KIGGGTTGHTTAKITAQHDVIYHEFLSHIGKEQTKLYYKAQDEAISWMRNLVNNQNIECD
ECCCCCCCCEEEEEEEHHHHHHHHHHHHHCCHHHEEEEEEHHHHHHHHHHHHCCCCCEEE
FQDEDHYLYATTHHGEHKLKRELEAYKQLGIPGEWLTSLPIDLEIRAALRLKGQARFHPL
EECCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEEECCCCCCCHH
QYLAYLCQKITEKGGLIYENTVCEKVVQGNDKRPAIQTRGGAKATAKKVVAATHFPFADG
HHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHEECCCCCCC
GGLYMTRLRADRSYVVAGTYAKPWPGGMYLSVDQTSRSLRSATINGEEMILVGGEGHKAG
CCEEEEEEECCCCEEEECCCCCCCCCCEEEEECHHHHHHHHEECCCCEEEEECCCCCCCC
QGMNALKHYEAVKQFATETLEGFTQEDQWATQDLITLDKLPYIGQLSALQPDVLVATGFR
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCH
KWGMTNSAVAAHVLCDLIVDGNSLYSQLFKPSRFHADPSIRSFLKENADVAKHLLRGKLH
HCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
QDIEHVEELEAGEGAVIDKDGERVGAYRDKDGTLHLVDTTCTHMGCEVNWNHADNTWDCP
HHHHHHHHHCCCCCCEECCCCCEECCEECCCCEEEEEECHHHHCCCEEECCCCCCCCCCC
CHGSRFSYTGDVIEGPAKKPLGKKE
CCCCCCEECCCHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]