Click here to switch to the map view.

The map label for this gene is xynC [H]

Identifier: 56965591

GI number: 56965591

Start: 3994881

End: 3995639

Strand: Direct

Name: xynC [H]

Synonym: ABC3833

Alternate gene names: 56965591

Gene position: 3994881-3995639 (Clockwise)

Preceding gene: 56965587

Following gene: 56965619

Centisome position: 92.82

GC content: 47.56

Gene sequence:

>759_bases
ATGGCTCTCATAACGATGCAGTTTCATTCCCAAACATTAGGAAAACAAACAAGCTTGGCGATCATTTTGCCCGATGAAGC
GCCGCCGCCCTTCAAAACATTATACTTGCTTCATGGGTGGAGCGACGACCATTCTGCCTGGCTGCGGCAAACAAGCATTG
AGCGTTATGCAATTCGAGAGCAAATCGCTGTTGTCATGCCGAATGTCGACTTGAGCTTTTATACCGATATGGTTTACGGT
AGCCCTTATTTCACCTTTCTAGCAGACGAATTGCCTGAGCGGCTTGCCCGGCTTTTCCCATTCTCGGACAAACGGGAAGA
CCAGTTTGTTGCTGGATTGTCGATGGGCGGTTTTGGCGCATTCAAATGGGCGCTTCACAATACTGAGCGCTTTCAGGCCG
CAGCTAGCTTTTCAGGCGCCCTTGATTTAAAAAGTCTATTGGAAGCACCTATCCCGGAGAGAATCCCCCATATGAAAGCC
GTGTTTGGCGAATCCCTTTCTCTCCATCAATCAGGGGGCGATTTAATCGCTTTGCTGAAAACAAGCATCGCCGAAAAAAT
CAAACTCCCGCACCTGTACCAGTATTGTGGAACGGAGGATTTTTTGTATGATATAAATACCTCTTTTCTAGAGGAGACCC
GGCAAGTAGGCGCGTCTTTAGTCTATTCTGAAGGGCCAGGTGGCCATACATGGGATTATTGGGATCGTTGCATCGACAAC
TGGCTTTTGTCGTTGCGAAAAGATGGGTTATTGAAATAA

Upstream 100 bases:

>100_bases
TTTCCCGCTTTATCTTACCATATTGCCTGGCTATCGGCAGCACCCCTCTATGAAAGCGATTTCAAATAGGCTATAATTAG
GTTAAGGAGGCGTTTAATTA

Downstream 100 bases:

>100_bases
AGGGGCACGCGGCGCATACAGGGCATAATTGAAAAAGCGCCAGTTGCCTGACTGGCAACTGGCGCATGTTTTCTATTAAA
AGGCAACGGCCGCTTTTTTA

Product: tributyrin esterase

Products: NA

Alternate protein names: Acetylxylosidase [H]

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MALITMQFHSQTLGKQTSLAIILPDEAPPPFKTLYLLHGWSDDHSAWLRQTSIERYAIREQIAVVMPNVDLSFYTDMVYG
SPYFTFLADELPERLARLFPFSDKREDQFVAGLSMGGFGAFKWALHNTERFQAAASFSGALDLKSLLEAPIPERIPHMKA
VFGESLSLHQSGGDLIALLKTSIAEKIKLPHLYQYCGTEDFLYDINTSFLEETRQVGASLVYSEGPGGHTWDYWDRCIDN
WLLSLRKDGLLK

Sequences:

>Translated_252_residues
MALITMQFHSQTLGKQTSLAIILPDEAPPPFKTLYLLHGWSDDHSAWLRQTSIERYAIREQIAVVMPNVDLSFYTDMVYG
SPYFTFLADELPERLARLFPFSDKREDQFVAGLSMGGFGAFKWALHNTERFQAAASFSGALDLKSLLEAPIPERIPHMKA
VFGESLSLHQSGGDLIALLKTSIAEKIKLPHLYQYCGTEDFLYDINTSFLEETRQVGASLVYSEGPGGHTWDYWDRCIDN
WLLSLRKDGLLK
>Mature_251_residues
ALITMQFHSQTLGKQTSLAIILPDEAPPPFKTLYLLHGWSDDHSAWLRQTSIERYAIREQIAVVMPNVDLSFYTDMVYGS
PYFTFLADELPERLARLFPFSDKREDQFVAGLSMGGFGAFKWALHNTERFQAAASFSGALDLKSLLEAPIPERIPHMKAV
FGESLSLHQSGGDLIALLKTSIAEKIKLPHLYQYCGTEDFLYDINTSFLEETRQVGASLVYSEGPGGHTWDYWDRCIDNW
LLSLRKDGLLK

Specific function: Unknown

COG id: COG0627

COG function: function code R; Predicted esterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000801 [H]

Pfam domain/function: PF00756 Esterase [H]

EC number: NA

Molecular weight: Translated: 28531; Mature: 28400

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALITMQFHSQTLGKQTSLAIILPDEAPPPFKTLYLLHGWSDDHSAWLRQTSIERYAIRE
CEEEEEEHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
QIAVVMPNVDLSFYTDMVYGSPYFTFLADELPERLARLFPFSDKREDQFVAGLSMGGFGA
HHEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHH
FKWALHNTERFQAAASFSGALDLKSLLEAPIPERIPHMKAVFGESLSLHQSGGDLIALLK
HHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCHHHCCHHHHHHCCCCEEECCCCHHHHHHH
TSIAEKIKLPHLYQYCGTEDFLYDINTSFLEETRQVGASLVYSEGPGGHTWDYWDRCIDN
HHHHHHHCCCHHHHHHCCCCEEEECCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHH
WLLSLRKDGLLK
HHHHHHHCCCCC
>Mature Secondary Structure 
ALITMQFHSQTLGKQTSLAIILPDEAPPPFKTLYLLHGWSDDHSAWLRQTSIERYAIRE
EEEEEEHHHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
QIAVVMPNVDLSFYTDMVYGSPYFTFLADELPERLARLFPFSDKREDQFVAGLSMGGFGA
HHEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHH
FKWALHNTERFQAAASFSGALDLKSLLEAPIPERIPHMKAVFGESLSLHQSGGDLIALLK
HHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCHHHCCHHHHHHCCCCEEECCCCHHHHHHH
TSIAEKIKLPHLYQYCGTEDFLYDINTSFLEETRQVGASLVYSEGPGGHTWDYWDRCIDN
HHHHHHHCCCHHHHHHCCCCEEEECCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHH
WLLSLRKDGLLK
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2111111 [H]