Click here to switch to the map view.

The map label for this gene is sdpR [H]

Identifier: 56965473

GI number: 56965473

Start: 3868713

End: 3868985

Strand: Direct

Name: sdpR [H]

Synonym: ABC3711

Alternate gene names: 56965473

Gene position: 3868713-3868985 (Clockwise)

Preceding gene: 56965472

Following gene: 56965474

Centisome position: 89.89

GC content: 43.96

Gene sequence:

>273_bases
ATGCACGAAGCATTTAAAGCGTTGGCCGATCCAACGAGGCGAAAAATCCTTGATTTGCTTAAAGAACAGGATCTAACTGC
TGGCGAGATTGCCAACCATTTTCAAGTGTCAAAGCCAAGCATTTCCCAGCATTTAAAACTGTTAAAGGCTGCCCACCTTG
TCCATGACGAGAAAAAAGGCCAGTTCGTCTATTACTCGCTCAACTTAACCGTATTTCAGGAGCTGCTTTCCTGGACAATG
GGCTTTTTTGAAAAAGGGGGAAAACAACCATGA

Upstream 100 bases:

>100_bases
CACTTGAAAATTAAGCAGTATTCCTGTATGCTTAGGTTAGTTAAGTATTTAAGTAATTTCTTAATTACTTAAATGTGCCG
TGTTTGAAAGGAGGCCCCTG

Downstream 100 bases:

>100_bases
AAAAACATCTCTTTCCAATTGTTTCAATTATAATTTCTATCGCTGTATGGCTTTTTGCTTATAAACACTTGCCTGCGGAA
ATGCCCGTACATTGGGGAGT

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MHEAFKALADPTRRKILDLLKEQDLTAGEIANHFQVSKPSISQHLKLLKAAHLVHDEKKGQFVYYSLNLTVFQELLSWTM
GFFEKGGKQP

Sequences:

>Translated_90_residues
MHEAFKALADPTRRKILDLLKEQDLTAGEIANHFQVSKPSISQHLKLLKAAHLVHDEKKGQFVYYSLNLTVFQELLSWTM
GFFEKGGKQP
>Mature_90_residues
MHEAFKALADPTRRKILDLLKEQDLTAGEIANHFQVSKPSISQHLKLLKAAHLVHDEKKGQFVYYSLNLTVFQELLSWTM
GFFEKGGKQP

Specific function: Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 10309; Mature: 10309

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEAFKALADPTRRKILDLLKEQDLTAGEIANHFQVSKPSISQHLKLLKAAHLVHDEKKG
CCHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
QFVYYSLNLTVFQELLSWTMGFFEKGGKQP
CEEEEECCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHEAFKALADPTRRKILDLLKEQDLTAGEIANHFQVSKPSISQHLKLLKAAHLVHDEKKG
CCHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
QFVYYSLNLTVFQELLSWTMGFFEKGGKQP
CEEEEECCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]