Click here to switch to the map view.

The map label for this gene is amaB [H]

Identifier: 56965245

GI number: 56965245

Start: 3615737

End: 3617035

Strand: Direct

Name: amaB [H]

Synonym: ABC3483

Alternate gene names: 56965245

Gene position: 3615737-3617035 (Clockwise)

Preceding gene: 56965242

Following gene: 56965253

Centisome position: 84.01

GC content: 50.35

Gene sequence:

>1299_bases
ATGAGTTTTATCCGCCAACAATTCAACGATGATGCCAGCCAAACAAAGGCGCTCAATGGCATCCAGCCGAACAAACTTGC
AGCCCGCCTCACCGCCCTATCGCAAATTGGCCGTACGAAAACAGGAGGGGTGACGAGGCTTGCTTATACCAACGAAGAAG
CACACGCAAAACGCCTGCTGACGCAATGGGGGACACGCATTGGGCTGACAATGCGAGAGGACGAGGTTGGAAACCTTATT
GGCCGGCTCGAAGGAACACAGCCTGATCTAGGAGCCGTAGCGACAGGTTCTCATATTGATACCGTTGTCAATGGCGGAGC
GTTCGATGGCGCTCTCGGCGCGGTCGCTTCCCTATGTGCAATTGAATCGCTTCTAGAAGACGGCAAGTCATTTCCTCGCC
CGTTGGAATGGATTATTTTTGTGAACGAGGAAGGATCTCGATTTCCAACTGGCATTTATGGCTCACAAGTGATGATGGGC
GAATTTACTGAGGCTGATCTTGAGCGCTACGCTGACAAAGATGGCGTGACGTTAGTAGATGCCTTAAAAAATCAAGGGTT
TGACCCACACAAACTAGCAAAAGCCCATCGTCAGCACAAAGACTTTTATGCCTTCATCGAATTGCATATCGAGCAAGGCA
AACGGTTAGAAAAAGCAAATATTCCGATTGGTGTCGTTAGCGGGATTGCGGGCCCGCTATGGCTTCAGGGCACATTTAAA
GGTGAAAGCGACCACGCCGGGAATACGCCGATGGGCATGCGCAAGGACGCAGCTGTCGCTGGAGCGGAATGGCTGGTCGC
GATTGAAAGCCTCCCTGCCCAGTTTAGCCAAACGGCTGTTGCTACCGTTGGCCAACAAACGGTATATCCGAATACGCCGA
ATGTTATTAGCGGTGAAGCAACACTTACCGTTGACATTCGCGACATTGAGCTCACACAACGCAACCGCTTAGTGGAAGCC
ATTCAAGCGGCCGGGTTGGAGATTGCTGCCAAACGTGGACTGGACTTTTCTTATCAAGTATTAACTGATATTGCCCCTGT
TCCCATTTCTGCTTTTATTCAAGAGACGATTAAAACAAGTGGGGAAAAACTAGGCTTGCCTACGATGACTCTCCCTAGCG
GTGCTGGGCATGATGCGATGATTATCGGCCGCCATGTCCCCCATACAGGCATGATTTTTGTACCGAGCGTTGACGGCAGA
AGCCATTGTCCAGAGGAGTTTACCTCACTTGATGACTGTGTAAAAGGCACAGCCGTATTAAAGGACGTACTTGCCCAATT
GTTGACCTCTATCAACTAA

Upstream 100 bases:

>100_bases
TCATAATCGACTTCCACTTATTTAGAAAGACAACGAGCTTTGGCCGTGTATAATAAGGGAGACAAGGGAGACAACCATTT
ATATGAAAAAGGAGCATAAT

Downstream 100 bases:

>100_bases
AACAGAAAAACAAATAGGAGATAAATTGGGAGCCAAGCACTTGAATCGCCAGTAAGTTTATTGAGCTTACTGGCGGTTGC
CTTATAAATGTTCAGACTCC

Product: allantoate amidohydrolase

Products: NA

Alternate protein names: L-carbamoylase [H]

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MSFIRQQFNDDASQTKALNGIQPNKLAARLTALSQIGRTKTGGVTRLAYTNEEAHAKRLLTQWGTRIGLTMREDEVGNLI
GRLEGTQPDLGAVATGSHIDTVVNGGAFDGALGAVASLCAIESLLEDGKSFPRPLEWIIFVNEEGSRFPTGIYGSQVMMG
EFTEADLERYADKDGVTLVDALKNQGFDPHKLAKAHRQHKDFYAFIELHIEQGKRLEKANIPIGVVSGIAGPLWLQGTFK
GESDHAGNTPMGMRKDAAVAGAEWLVAIESLPAQFSQTAVATVGQQTVYPNTPNVISGEATLTVDIRDIELTQRNRLVEA
IQAAGLEIAAKRGLDFSYQVLTDIAPVPISAFIQETIKTSGEKLGLPTMTLPSGAGHDAMIIGRHVPHTGMIFVPSVDGR
SHCPEEFTSLDDCVKGTAVLKDVLAQLLTSIN

Sequences:

>Translated_432_residues
MSFIRQQFNDDASQTKALNGIQPNKLAARLTALSQIGRTKTGGVTRLAYTNEEAHAKRLLTQWGTRIGLTMREDEVGNLI
GRLEGTQPDLGAVATGSHIDTVVNGGAFDGALGAVASLCAIESLLEDGKSFPRPLEWIIFVNEEGSRFPTGIYGSQVMMG
EFTEADLERYADKDGVTLVDALKNQGFDPHKLAKAHRQHKDFYAFIELHIEQGKRLEKANIPIGVVSGIAGPLWLQGTFK
GESDHAGNTPMGMRKDAAVAGAEWLVAIESLPAQFSQTAVATVGQQTVYPNTPNVISGEATLTVDIRDIELTQRNRLVEA
IQAAGLEIAAKRGLDFSYQVLTDIAPVPISAFIQETIKTSGEKLGLPTMTLPSGAGHDAMIIGRHVPHTGMIFVPSVDGR
SHCPEEFTSLDDCVKGTAVLKDVLAQLLTSIN
>Mature_431_residues
SFIRQQFNDDASQTKALNGIQPNKLAARLTALSQIGRTKTGGVTRLAYTNEEAHAKRLLTQWGTRIGLTMREDEVGNLIG
RLEGTQPDLGAVATGSHIDTVVNGGAFDGALGAVASLCAIESLLEDGKSFPRPLEWIIFVNEEGSRFPTGIYGSQVMMGE
FTEADLERYADKDGVTLVDALKNQGFDPHKLAKAHRQHKDFYAFIELHIEQGKRLEKANIPIGVVSGIAGPLWLQGTFKG
ESDHAGNTPMGMRKDAAVAGAEWLVAIESLPAQFSQTAVATVGQQTVYPNTPNVISGEATLTVDIRDIELTQRNRLVEAI
QAAGLEIAAKRGLDFSYQVLTDIAPVPISAFIQETIKTSGEKLGLPTMTLPSGAGHDAMIIGRHVPHTGMIFVPSVDGRS
HCPEEFTSLDDCVKGTAVLKDVLAQLLTSIN

Specific function: Involved In The Anaerobic Utilization Of Allantoin. Converts Allantoate To (S)-Ureidoglycolate And Ammonia. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI1786726, Length=398, Percent_Identity=37.4371859296482, Blast_Score=231, Evalue=9e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.87 [H]

Molecular weight: Translated: 46453; Mature: 46322

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFIRQQFNDDASQTKALNGIQPNKLAARLTALSQIGRTKTGGVTRLAYTNEEAHAKRLL
CCHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHH
TQWGTRIGLTMREDEVGNLIGRLEGTQPDLGAVATGSHIDTVVNGGAFDGALGAVASLCA
HHCCCCCCCEECHHHHHHHHHHCCCCCCCCCCEECCCHHHHHCCCCCCHHHHHHHHHHHH
IESLLEDGKSFPRPLEWIIFVNEEGSRFPTGIYGSQVMMGEFTEADLERYADKDGVTLVD
HHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCHHHH
ALKNQGFDPHKLAKAHRQHKDFYAFIELHIEQGKRLEKANIPIGVVSGIAGPLWLQGTFK
HHHHCCCCHHHHHHHHHHHHHEEEEEEEEHHHCCCEECCCCCEEEHHCCCCCEEEEEEEC
GESDHAGNTPMGMRKDAAVAGAEWLVAIESLPAQFSQTAVATVGQQTVYPNTPNVISGEA
CCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCE
TLTVDIRDIELTQRNRLVEAIQAAGLEIAAKRGLDFSYQVLTDIAPVPISAFIQETIKTS
EEEEEEEEEHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHCC
GEKLGLPTMTLPSGAGHDAMIIGRHVPHTGMIFVPSVDGRSHCPEEFTSLDDCVKGTAVL
CCCCCCCCEECCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
KDVLAQLLTSIN
HHHHHHHHHHCC
>Mature Secondary Structure 
SFIRQQFNDDASQTKALNGIQPNKLAARLTALSQIGRTKTGGVTRLAYTNEEAHAKRLL
CHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHH
TQWGTRIGLTMREDEVGNLIGRLEGTQPDLGAVATGSHIDTVVNGGAFDGALGAVASLCA
HHCCCCCCCEECHHHHHHHHHHCCCCCCCCCCEECCCHHHHHCCCCCCHHHHHHHHHHHH
IESLLEDGKSFPRPLEWIIFVNEEGSRFPTGIYGSQVMMGEFTEADLERYADKDGVTLVD
HHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCHHHH
ALKNQGFDPHKLAKAHRQHKDFYAFIELHIEQGKRLEKANIPIGVVSGIAGPLWLQGTFK
HHHHCCCCHHHHHHHHHHHHHEEEEEEEEHHHCCCEECCCCCEEEHHCCCCCEEEEEEEC
GESDHAGNTPMGMRKDAAVAGAEWLVAIESLPAQFSQTAVATVGQQTVYPNTPNVISGEA
CCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCE
TLTVDIRDIELTQRNRLVEAIQAAGLEIAAKRGLDFSYQVLTDIAPVPISAFIQETIKTS
EEEEEEEEEHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHCC
GEKLGLPTMTLPSGAGHDAMIIGRHVPHTGMIFVPSVDGRSHCPEEFTSLDDCVKGTAVL
CCCCCCCCEECCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
KDVLAQLLTSIN
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9023955; 8285691 [H]