Click here to switch to the map view.

The map label for this gene is yybA [H]

Identifier: 56965006

GI number: 56965006

Start: 3365489

End: 3365941

Strand: Direct

Name: yybA [H]

Synonym: ABC3242

Alternate gene names: 56965006

Gene position: 3365489-3365941 (Clockwise)

Preceding gene: 56965004

Following gene: 56965007

Centisome position: 78.2

GC content: 36.87

Gene sequence:

>453_bases
ATGAAGGACATTCTCCGTGAGATTGGAATGATAGCAAGGGCATTAGATTCTATTAGCAATATCGAGTTTAAAGAATATGA
CCTTACAAAAGGACAGTATTTATACCTTGTGAGGATCTGTGAACACCCAGGCATCATTCAAGAAAAACTAGCCGAGATGA
TAAAAGTAGATCGTACAACGGCAGCTCGTGCGATAAAGAAACTGGAAAAGAACGGTTTTATTGAAAAGAAGGAGGATGCA
CATAACAAAAAAATTAAAAAACTCTTCCCTACACAAAAAGGGGAGCGTGTGTATCCTTTTATCAGGAAAGAAAATGACTA
TTCCAATACCGTTGCCTTAACAGGATTTTCTGAAAATGAAGCAGATACCCTTTTTCATCTGCTACAAAGAGTCAGAAAGA
ATGTAGAGAAGGATTGGGAATTTGTCAAAAAGGGCAACAAAAGACATTATTGA

Upstream 100 bases:

>100_bases
TTATGATCATTTTTTATTGCAAATACAATAAAATTCGAGTAAAATAAACTCATTGTTTTTGTTGCATTTACAACAAAAAT
ACTACTAAGGAGTTTTCATA

Downstream 100 bases:

>100_bases
TTCGTAAAGGGTGGACAAATAATTGACTATCACGATTAAAAAGTGCACATTAGCTGACTTGCGATTACTTCAAGACATTA
GTTATGAAACATACAATGAG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKDILREIGMIARALDSISNIEFKEYDLTKGQYLYLVRICEHPGIIQEKLAEMIKVDRTTAARAIKKLEKNGFIEKKEDA
HNKKIKKLFPTQKGERVYPFIRKENDYSNTVALTGFSENEADTLFHLLQRVRKNVEKDWEFVKKGNKRHY

Sequences:

>Translated_150_residues
MKDILREIGMIARALDSISNIEFKEYDLTKGQYLYLVRICEHPGIIQEKLAEMIKVDRTTAARAIKKLEKNGFIEKKEDA
HNKKIKKLFPTQKGERVYPFIRKENDYSNTVALTGFSENEADTLFHLLQRVRKNVEKDWEFVKKGNKRHY
>Mature_150_residues
MKDILREIGMIARALDSISNIEFKEYDLTKGQYLYLVRICEHPGIIQEKLAEMIKVDRTTAARAIKKLEKNGFIEKKEDA
HNKKIKKLFPTQKGERVYPFIRKENDYSNTVALTGFSENEADTLFHLLQRVRKNVEKDWEFVKKGNKRHY

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17705; Mature: 17705

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDILREIGMIARALDSISNIEFKEYDLTKGQYLYLVRICEHPGIIQEKLAEMIKVDRTT
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
AARAIKKLEKNGFIEKKEDAHNKKIKKLFPTQKGERVYPFIRKENDYSNTVALTGFSENE
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEECCEEECCCCCCCEEEEECCCCCC
ADTLFHLLQRVRKNVEKDWEFVKKGNKRHY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKDILREIGMIARALDSISNIEFKEYDLTKGQYLYLVRICEHPGIIQEKLAEMIKVDRTT
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
AARAIKKLEKNGFIEKKEDAHNKKIKKLFPTQKGERVYPFIRKENDYSNTVALTGFSENE
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEECCEEECCCCCCCEEEEECCCCCC
ADTLFHLLQRVRKNVEKDWEFVKKGNKRHY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]