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The map label for this gene is yhcF [H]

Identifier: 56964896

GI number: 56964896

Start: 3261035

End: 3261415

Strand: Direct

Name: yhcF [H]

Synonym: ABC3132

Alternate gene names: 56964896

Gene position: 3261035-3261415 (Clockwise)

Preceding gene: 56964895

Following gene: 56964897

Centisome position: 75.77

GC content: 46.19

Gene sequence:

>381_bases
ATGAACATTCAATTTAACACCCGCGAGCCCGTTTACGCACAAGTTATCCGCTACTTTAAGGAGCAAATTGCTACCGGAAA
GCTTGTTGCCGGGCAGGAAATCCCTTCGCGCCGCGAACTAGGCGCGACATTAAAAATCAATCCAAACACAGCGCAACGTG
CCTATAAAGAAATGGAGGATCAATTGTTGATTCATACTGAACGGAACAAACCCAGCCGGATTACGTATGACCAAGACGTA
CTTGACTCCGTCCGTGATGAATTAATCCAGGAGTCAATTGATACATTTTTGCAAGCAATCCGCACCATCCAAGTTCCGCT
CGACGAAGTCATTGCCATGATCCAAGCTAGCTATAAGGAAGGGGAAACGGAACATGATTGA

Upstream 100 bases:

>100_bases
ACGGACAAATCCTCTATCATGGGAAAACCGAGTATAGAACCGAAAATGGATATCTTCATTTCCATAAATTGGAACGTGCA
TAAAAAGAAGGGAGCGCTTG

Downstream 100 bases:

>100_bases
AGTAAAAAACGTCTCGAAGAAATATGGCCGCAAAGCTGTGCTGCATAACGTCTCGTTCATAGCCAAACGCGGGGAAATTA
CTGCGCTAATCGGCATTAAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MNIQFNTREPVYAQVIRYFKEQIATGKLVAGQEIPSRRELGATLKINPNTAQRAYKEMEDQLLIHTERNKPSRITYDQDV
LDSVRDELIQESIDTFLQAIRTIQVPLDEVIAMIQASYKEGETEHD

Sequences:

>Translated_126_residues
MNIQFNTREPVYAQVIRYFKEQIATGKLVAGQEIPSRRELGATLKINPNTAQRAYKEMEDQLLIHTERNKPSRITYDQDV
LDSVRDELIQESIDTFLQAIRTIQVPLDEVIAMIQASYKEGETEHD
>Mature_126_residues
MNIQFNTREPVYAQVIRYFKEQIATGKLVAGQEIPSRRELGATLKINPNTAQRAYKEMEDQLLIHTERNKPSRITYDQDV
LDSVRDELIQESIDTFLQAIRTIQVPLDEVIAMIQASYKEGETEHD

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14580; Mature: 14580

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQFNTREPVYAQVIRYFKEQIATGKLVAGQEIPSRRELGATLKINPNTAQRAYKEMED
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEEECCCHHHHHHHHHHH
QLLIHTERNKPSRITYDQDVLDSVRDELIQESIDTFLQAIRTIQVPLDEVIAMIQASYKE
HEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
GETEHD
CCCCCC
>Mature Secondary Structure
MNIQFNTREPVYAQVIRYFKEQIATGKLVAGQEIPSRRELGATLKINPNTAQRAYKEMED
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEEECCCHHHHHHHHHHH
QLLIHTERNKPSRITYDQDVLDSVRDELIQESIDTFLQAIRTIQVPLDEVIAMIQASYKE
HEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
GETEHD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]