Click here to switch to the map view.

The map label for this gene is opuCD [H]

Identifier: 56964796

GI number: 56964796

Start: 3154336

End: 3154998

Strand: Direct

Name: opuCD [H]

Synonym: ABC3032

Alternate gene names: 56964796

Gene position: 3154336-3154998 (Clockwise)

Preceding gene: 56964795

Following gene: 56964824

Centisome position: 73.29

GC content: 49.47

Gene sequence:

>663_bases
ATGGACACGTTCCAGGAATTCATCACATACGTTTCCCAAAACAGCGGCTACATTGCGGCACAATTTTACCGCCACTTTCT
TATGGCTGCCTATGGCGTCCTTTTTGCAGCGATTGTATCGATTCCCCTTGGCGTGCTCATTGCCAAATATGGGCGTTTAA
GCGGCTGGGTTCTGGCTGTTGGGAACATCATTCAGACCATTCCTGCTCTTGGCATGATCGCCGTCATTATGCTCGTCCTC
GGCCTTGGACCCAACACTGCTGTCATGACGTTATTTCTTTATTCCATTTTGCCGATTACACAAAACACGTATGTCGGCAT
GAAAGGTGTCGACCAAGCTCTTGTTGAGGCTGGGCGTGCAAGTGGCATGACACGTTTTCAGCTATTGCGCATGGTTGAAC
TCCCATTGGCCATTAGCGTCATTATGGCCGGCCTCCGCAATGCCCTTGTCGTCGGGATTGGCATTGCTGCAATTGGCGCT
TTTGTCGGTGCAGGCGGGCTTGGCGAAATCATTTTGACAGGGACAAACGCCACAGATGGGATGGCGATTATTCTTGCCGG
TGCCATTCCAACTGCCTTTATGGCGATTATTGCAGACATGTTAATGGGCTGGATTGAAAGAAAGCTACACCCGTTTAAAC
AATCGAAACCACAAACCAGTTAA

Upstream 100 bases:

>100_bases
TAAACTATATGGCTGACGTGGAATTAAAAAATCCGCGCCTTGTTGCCCAAACCTTTTTAGAAGAAAACAATTACTTTAAG
GACAAGGAGGAAAGCCACTA

Downstream 100 bases:

>100_bases
CCATGTTAACGCAGCTTAAGCCAGTTGAGCGCATGTGCTCAACTGGCTTTTATGTTTCTATACCACTCGTCCTCTCATGC
CTTTACCTGCTCGAGAAGAG

Product: proline/glycine betaine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MDTFQEFITYVSQNSGYIAAQFYRHFLMAAYGVLFAAIVSIPLGVLIAKYGRLSGWVLAVGNIIQTIPALGMIAVIMLVL
GLGPNTAVMTLFLYSILPITQNTYVGMKGVDQALVEAGRASGMTRFQLLRMVELPLAISVIMAGLRNALVVGIGIAAIGA
FVGAGGLGEIILTGTNATDGMAIILAGAIPTAFMAIIADMLMGWIERKLHPFKQSKPQTS

Sequences:

>Translated_220_residues
MDTFQEFITYVSQNSGYIAAQFYRHFLMAAYGVLFAAIVSIPLGVLIAKYGRLSGWVLAVGNIIQTIPALGMIAVIMLVL
GLGPNTAVMTLFLYSILPITQNTYVGMKGVDQALVEAGRASGMTRFQLLRMVELPLAISVIMAGLRNALVVGIGIAAIGA
FVGAGGLGEIILTGTNATDGMAIILAGAIPTAFMAIIADMLMGWIERKLHPFKQSKPQTS
>Mature_220_residues
MDTFQEFITYVSQNSGYIAAQFYRHFLMAAYGVLFAAIVSIPLGVLIAKYGRLSGWVLAVGNIIQTIPALGMIAVIMLVL
GLGPNTAVMTLFLYSILPITQNTYVGMKGVDQALVEAGRASGMTRFQLLRMVELPLAISVIMAGLRNALVVGIGIAAIGA
FVGAGGLGEIILTGTNATDGMAIILAGAIPTAFMAIIADMLMGWIERKLHPFKQSKPQTS

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=216, Percent_Identity=34.7222222222222, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1788451, Length=196, Percent_Identity=29.5918367346939, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1789033, Length=167, Percent_Identity=30.5389221556886, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23297; Mature: 23297

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTFQEFITYVSQNSGYIAAQFYRHFLMAAYGVLFAAIVSIPLGVLIAKYGRLSGWVLAV
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
GNIIQTIPALGMIAVIMLVLGLGPNTAVMTLFLYSILPITQNTYVGMKGVDQALVEAGRA
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
SGMTRFQLLRMVELPLAISVIMAGLRNALVVGIGIAAIGAFVGAGGLGEIILTGTNATDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
MAIILAGAIPTAFMAIIADMLMGWIERKLHPFKQSKPQTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC
>Mature Secondary Structure
MDTFQEFITYVSQNSGYIAAQFYRHFLMAAYGVLFAAIVSIPLGVLIAKYGRLSGWVLAV
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
GNIIQTIPALGMIAVIMLVLGLGPNTAVMTLFLYSILPITQNTYVGMKGVDQALVEAGRA
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
SGMTRFQLLRMVELPLAISVIMAGLRNALVVGIGIAAIGAFVGAGGLGEIILTGTNATDG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
MAIILAGAIPTAFMAIIADMLMGWIERKLHPFKQSKPQTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]