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The map label for this gene is yfkH [H]

Identifier: 56964680

GI number: 56964680

Start: 3041368

End: 3042198

Strand: Direct

Name: yfkH [H]

Synonym: ABC2916

Alternate gene names: 56964680

Gene position: 3041368-3042198 (Clockwise)

Preceding gene: 56964673

Following gene: 56964681

Centisome position: 70.67

GC content: 42.12

Gene sequence:

>831_bases
ATGGACTTGCGTTTTGCTCGTTTATTTACAAAGAAATTGATTGCCCAATTAAAAAGCGACCCTATTCCTGATTTAGCGGC
TACGCTTGCTTTTTATTTTATTTTATCGATTTTTCCACTGATGATTTTTGTGCTCGCCGGTGTATCCTTTTTTGAAATTA
ACAATGACGAAGTGCAAAACTTAATTAATGCCTATTTTCCTGGTGAAATTGGTGACACGTTCAGCCGAATTGTCCTAAAT
ACGATTGGCGAACCACAAGCGGGCTTGCTGTCAATTGGGATTTTAGGCACGCTCTGGTCTGCTTCAAACGGCATCAATGC
TTTTATTCGTTCAGTGAATCGTGCTTACAACATTGAAGAGACGAGGCATTTTTTAAAGCTCCGCAGCATTGCAATTGGAT
TGACTGTTGGTATGGTGTTGCTTATTATCATCACACTCGCGCTTCCCGTATTCGGAAATCAAATTTTAAACCTTCTTGAG
GCGTTTTTGCTCCTTCCGACCGAGGTTGTTGCTATGCTCGATAATTTCCGTTGGATTGCGGCATTTGCGATCATGATTGT
CGCTCTTATGGCGTTATACTGGATTGCGCCTAACGCCAAGCAGCGTTTTCGCGATGGGCTAATAGGCGCTATTTTTGCCA
CAATTGGCTGGCAGTTAATTTCTTTTTTCTTTTCCCTATATGTCAGCAATTACGCCAATTACGAAAGCACATACGGCCCA
TTGGCAGGCGTCATCATTCTCATGTTTTGGTTTTTCCTGACTGGGATTATCCTCATTGTCGGCGCGGAAATAAACGCGAC
ATTGCATCATTTGCGAAAAAAAAGCGCTTAA

Upstream 100 bases:

>100_bases
TTAGTATATAGGATAATGAGTCGTCCTGTCGAAGTGTTTGTTTATGATTTTAAAAGAGCGGGTATAAATCAATGGGTTGT
TTCATGTCTGGAGGGAGAAT

Downstream 100 bases:

>100_bases
AACGTATAGAAACTCACTATGTGGGTATGATGGTAGCAGAACTTACCAATTAGTCATTTGAGGAGTGGTATGATGAATAA
AACAGAATTGATTAATGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MDLRFARLFTKKLIAQLKSDPIPDLAATLAFYFILSIFPLMIFVLAGVSFFEINNDEVQNLINAYFPGEIGDTFSRIVLN
TIGEPQAGLLSIGILGTLWSASNGINAFIRSVNRAYNIEETRHFLKLRSIAIGLTVGMVLLIIITLALPVFGNQILNLLE
AFLLLPTEVVAMLDNFRWIAAFAIMIVALMALYWIAPNAKQRFRDGLIGAIFATIGWQLISFFFSLYVSNYANYESTYGP
LAGVIILMFWFFLTGIILIVGAEINATLHHLRKKSA

Sequences:

>Translated_276_residues
MDLRFARLFTKKLIAQLKSDPIPDLAATLAFYFILSIFPLMIFVLAGVSFFEINNDEVQNLINAYFPGEIGDTFSRIVLN
TIGEPQAGLLSIGILGTLWSASNGINAFIRSVNRAYNIEETRHFLKLRSIAIGLTVGMVLLIIITLALPVFGNQILNLLE
AFLLLPTEVVAMLDNFRWIAAFAIMIVALMALYWIAPNAKQRFRDGLIGAIFATIGWQLISFFFSLYVSNYANYESTYGP
LAGVIILMFWFFLTGIILIVGAEINATLHHLRKKSA
>Mature_276_residues
MDLRFARLFTKKLIAQLKSDPIPDLAATLAFYFILSIFPLMIFVLAGVSFFEINNDEVQNLINAYFPGEIGDTFSRIVLN
TIGEPQAGLLSIGILGTLWSASNGINAFIRSVNRAYNIEETRHFLKLRSIAIGLTVGMVLLIIITLALPVFGNQILNLLE
AFLLLPTEVVAMLDNFRWIAAFAIMIVALMALYWIAPNAKQRFRDGLIGAIFATIGWQLISFFFSLYVSNYANYESTYGP
LAGVIILMFWFFLTGIILIVGAEINATLHHLRKKSA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790319, Length=280, Percent_Identity=26.7857142857143, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 30794; Mature: 30794

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLRFARLFTKKLIAQLKSDPIPDLAATLAFYFILSIFPLMIFVLAGVSFFEINNDEVQN
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCHHHHHH
LINAYFPGEIGDTFSRIVLNTIGEPQAGLLSIGILGTLWSASNGINAFIRSVNRAYNIEE
HHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH
TRHFLKLRSIAIGLTVGMVLLIIITLALPVFGNQILNLLEAFLLLPTEVVAMLDNFRWIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFAIMIVALMALYWIAPNAKQRFRDGLIGAIFATIGWQLISFFFSLYVSNYANYESTYGP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LAGVIILMFWFFLTGIILIVGAEINATLHHLRKKSA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLRFARLFTKKLIAQLKSDPIPDLAATLAFYFILSIFPLMIFVLAGVSFFEINNDEVQN
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCHHHHHH
LINAYFPGEIGDTFSRIVLNTIGEPQAGLLSIGILGTLWSASNGINAFIRSVNRAYNIEE
HHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH
TRHFLKLRSIAIGLTVGMVLLIIITLALPVFGNQILNLLEAFLLLPTEVVAMLDNFRWIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFAIMIVALMALYWIAPNAKQRFRDGLIGAIFATIGWQLISFFFSLYVSNYANYESTYGP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LAGVIILMFWFFLTGIILIVGAEINATLHHLRKKSA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]