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The map label for this gene is gerIA [H]

Identifier: 56963768

GI number: 56963768

Start: 2116480

End: 2118000

Strand: Direct

Name: gerIA [H]

Synonym: ABC2003

Alternate gene names: 56963768

Gene position: 2116480-2118000 (Clockwise)

Preceding gene: 56963761

Following gene: 56963769

Centisome position: 49.18

GC content: 43.72

Gene sequence:

>1521_bases
ATGCCTAAACAAAGCAAACAAGGCCGTTTCGAACGAAAAATCCGTAAACAAAAACGTTCAAGCGCGAAGACGCTGGAAGA
GCTCCTTGACTTGTGTCGGCGATCAAATGATTTTCATTCCTTTAAACAGGCGGACGACAATCCTTTTGAGATTTATTATT
TTTCATCGATCGTCAAATCCAACGTCATCCATGAACAGATTTTGCCAGTTCTTGCTAATAAGCAACTTAAAACACTCGTT
GGGGTAAAAGAAGCGATTAGAGTAGAAGAAACGAAAATTGAACATCAGTTAGCTAAAATTGAACAAGCTTTAATGCGCGG
CGAAGTCCTTATTTGTCTTCAACAGGCACCGACAGAAGCATTGCTTGTCCCAGCAGAGCAAGCTGAAACTCGTTCGATTA
ACCCGCCTGAAGTTGAGTTTAGTGTAGTTGGGCCAAAAGAAGCGTTTGTTGAACCGCTGTCGACAAATATAAACTTAGTG
CGCAAGCGGCTGCCGATTCCAGACCTTGTCATAACCGAACGGATCGTTGGCCATTTAAGTAAAACAAAAGTAGCGATTCT
ACATATAGACGGCATTACAAATAATCAAGTCGTCCAAACAGTAACACAGCGCATTGAAGACATCGGCTTTGATGAAATCA
TCGATAGTTCTTATATCGCGCAATTGATTTCAGATGACTCCAATTCGATTTTTACACAACTGATTGATACTGAACGCCCC
GACCGGGTTGCAGCGATGCTTGCCGAAGGAAAAGTTGCCGTAATTGTTGATGGCTCGCCTCATGCACTTACCGGGCCAAC
TTCGTTTGTTGAATTCTTTTCTGCTTTTGAAGATTATTTTTTGCCATGGCCGCTCGCATCTGCTTTTCGCCTTATCCGAC
TATGTGCTGTATTGTTTTCGATTTTGTCGACAGCCTTATATGTGGCTGTGATGACCTACCATTATGAAATGATTCCGACA
CAACTGCTGCACAAACTCGTTTCGTCGCGGAGCGGGATTCCCTTTCCGCCTATTTTTGAGGCATTGATCCTTGAAGTTGT
CATTGAGTTGCTACGAGAGGCAGGAGCGCGATTGCCGAATAAAATTGGGCAAACGATTGGGATCGTTGGCGGCATTGTAA
TCGGAACAGCCGCTGTCGAAGCAGGGCTTACAAGCAATATTCTCTTAATCATTGTTGCATTGACTGCGCTTGCTTCCTTT
ACGACACCTATTTACCAAATGGGTAATGCGATCCGCTTGATTCGTTTTCCTTTTATTCTTGCCGCCCAGTGGCTTGGCTT
TTTAGGAGTAGCGGCTTGTTTCGCCCTCATTCTAAGCCATTTACTTGTTTTAACTTCGCTTGGACAACCTTATTTAGCAC
CAATTTATCCGTTGAGAGTAACTGATTTGAAAGACTCCTTTTTCAGGTTGCCGTTTAACAAACAGAAAAAGCGCCCTGTA
AGCGTACGAGCTAAGAAACGCAAGCGCTTTAGCTCCAGCCACGATGGCAACCATTTAAAAAAGCGCGACATTGAGGAGTA
A

Upstream 100 bases:

>100_bases
GAGCTTATCCATCTTTTTCCCACCCCACATTCTCTTTTTCATGCATAAAAGAAGTGGCTCAACACAGACTAATGGACATG
CCAATCTCGGAGTGATGCCA

Downstream 100 bases:

>100_bases
AAAAAGGAGTGGACCAATGATGCCAGCTACACACACTCAAGCCCCAAGTGAAAGTCGGCTACTCTCGCCATTTTTCAGCT
TTTTTATCGTTGTCGGCGCC

Product: sopre germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MPKQSKQGRFERKIRKQKRSSAKTLEELLDLCRRSNDFHSFKQADDNPFEIYYFSSIVKSNVIHEQILPVLANKQLKTLV
GVKEAIRVEETKIEHQLAKIEQALMRGEVLICLQQAPTEALLVPAEQAETRSINPPEVEFSVVGPKEAFVEPLSTNINLV
RKRLPIPDLVITERIVGHLSKTKVAILHIDGITNNQVVQTVTQRIEDIGFDEIIDSSYIAQLISDDSNSIFTQLIDTERP
DRVAAMLAEGKVAVIVDGSPHALTGPTSFVEFFSAFEDYFLPWPLASAFRLIRLCAVLFSILSTALYVAVMTYHYEMIPT
QLLHKLVSSRSGIPFPPIFEALILEVVIELLREAGARLPNKIGQTIGIVGGIVIGTAAVEAGLTSNILLIIVALTALASF
TTPIYQMGNAIRLIRFPFILAAQWLGFLGVAACFALILSHLLVLTSLGQPYLAPIYPLRVTDLKDSFFRLPFNKQKKRPV
SVRAKKRKRFSSSHDGNHLKKRDIEE

Sequences:

>Translated_506_residues
MPKQSKQGRFERKIRKQKRSSAKTLEELLDLCRRSNDFHSFKQADDNPFEIYYFSSIVKSNVIHEQILPVLANKQLKTLV
GVKEAIRVEETKIEHQLAKIEQALMRGEVLICLQQAPTEALLVPAEQAETRSINPPEVEFSVVGPKEAFVEPLSTNINLV
RKRLPIPDLVITERIVGHLSKTKVAILHIDGITNNQVVQTVTQRIEDIGFDEIIDSSYIAQLISDDSNSIFTQLIDTERP
DRVAAMLAEGKVAVIVDGSPHALTGPTSFVEFFSAFEDYFLPWPLASAFRLIRLCAVLFSILSTALYVAVMTYHYEMIPT
QLLHKLVSSRSGIPFPPIFEALILEVVIELLREAGARLPNKIGQTIGIVGGIVIGTAAVEAGLTSNILLIIVALTALASF
TTPIYQMGNAIRLIRFPFILAAQWLGFLGVAACFALILSHLLVLTSLGQPYLAPIYPLRVTDLKDSFFRLPFNKQKKRPV
SVRAKKRKRFSSSHDGNHLKKRDIEE
>Mature_505_residues
PKQSKQGRFERKIRKQKRSSAKTLEELLDLCRRSNDFHSFKQADDNPFEIYYFSSIVKSNVIHEQILPVLANKQLKTLVG
VKEAIRVEETKIEHQLAKIEQALMRGEVLICLQQAPTEALLVPAEQAETRSINPPEVEFSVVGPKEAFVEPLSTNINLVR
KRLPIPDLVITERIVGHLSKTKVAILHIDGITNNQVVQTVTQRIEDIGFDEIIDSSYIAQLISDDSNSIFTQLIDTERPD
RVAAMLAEGKVAVIVDGSPHALTGPTSFVEFFSAFEDYFLPWPLASAFRLIRLCAVLFSILSTALYVAVMTYHYEMIPTQ
LLHKLVSSRSGIPFPPIFEALILEVVIELLREAGARLPNKIGQTIGIVGGIVIGTAAVEAGLTSNILLIIVALTALASFT
TPIYQMGNAIRLIRFPFILAAQWLGFLGVAACFALILSHLLVLTSLGQPYLAPIYPLRVTDLKDSFFRLPFNKQKKRPVS
VRAKKRKRFSSSHDGNHLKKRDIEE

Specific function: Required for inosine germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 56526; Mature: 56395

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKQSKQGRFERKIRKQKRSSAKTLEELLDLCRRSNDFHSFKQADDNPFEIYYFSSIVKS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEHHHHHHH
NVIHEQILPVLANKQLKTLVGVKEAIRVEETKIEHQLAKIEQALMRGEVLICLQQAPTEA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCE
LLVPAEQAETRSINPPEVEFSVVGPKEAFVEPLSTNINLVRKRLPIPDLVITERIVGHLS
EEECCHHHCCCCCCCCCEEEEEECCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHH
KTKVAILHIDGITNNQVVQTVTQRIEDIGFDEIIDSSYIAQLISDDSNSIFTQLIDTERP
CCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
DRVAAMLAEGKVAVIVDGSPHALTGPTSFVEFFSAFEDYFLPWPLASAFRLIRLCAVLFS
HHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
ILSTALYVAVMTYHYEMIPTQLLHKLVSSRSGIPFPPIFEALILEVVIELLREAGARLPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
KIGQTIGIVGGIVIGTAAVEAGLTSNILLIIVALTALASFTTPIYQMGNAIRLIRFPFIL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AAQWLGFLGVAACFALILSHLLVLTSLGQPYLAPIYPLRVTDLKDSFFRLPFNKQKKRPV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHEECCCCCCCCCCC
SVRAKKRKRFSSSHDGNHLKKRDIEE
HHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKQSKQGRFERKIRKQKRSSAKTLEELLDLCRRSNDFHSFKQADDNPFEIYYFSSIVKS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEHHHHHHH
NVIHEQILPVLANKQLKTLVGVKEAIRVEETKIEHQLAKIEQALMRGEVLICLQQAPTEA
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCE
LLVPAEQAETRSINPPEVEFSVVGPKEAFVEPLSTNINLVRKRLPIPDLVITERIVGHLS
EEECCHHHCCCCCCCCCEEEEEECCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHH
KTKVAILHIDGITNNQVVQTVTQRIEDIGFDEIIDSSYIAQLISDDSNSIFTQLIDTERP
CCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
DRVAAMLAEGKVAVIVDGSPHALTGPTSFVEFFSAFEDYFLPWPLASAFRLIRLCAVLFS
HHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
ILSTALYVAVMTYHYEMIPTQLLHKLVSSRSGIPFPPIFEALILEVVIELLREAGARLPN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
KIGQTIGIVGGIVIGTAAVEAGLTSNILLIIVALTALASFTTPIYQMGNAIRLIRFPFIL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AAQWLGFLGVAACFALILSHLLVLTSLGQPYLAPIYPLRVTDLKDSFFRLPFNKQKKRPV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHEECCCCCCCCCCC
SVRAKKRKRFSSSHDGNHLKKRDIEE
HHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9852021 [H]